Gene : Phvul.006G159900 P. vulgaris v2.1
Defline:  (1 of 6) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  1597
Name:  ? Phvul.006G159900 Secondary Identifier:  ? PAC:37172811
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G159900 0.5kb upstream 0.5kb upstream 4386 true Chr06: 26407798-26412183 Phaseolus vulgaris
Phvul.006G159900 0.5kb upstream 0.5kb upstream 500 false Chr06: 26407798-26408297 Phaseolus vulgaris
Phvul.006G159900 0.5kb downstream 0.5kb downstream 4386 true Chr06: 26408298-26412683 Phaseolus vulgaris
Phvul.006G159900 0.5kb downstream 0.5kb downstream 500 false Chr06: 26412184-26412683 Phaseolus vulgaris
Phvul.006G159900 1.0kb upstream 1.0kb upstream 4886 true Chr06: 26407298-26412183 Phaseolus vulgaris
Phvul.006G159900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 26407298-26408297 Phaseolus vulgaris
Phvul.006G159900 1.0kb downstream 1.0kb downstream 4886 true Chr06: 26408298-26413183 Phaseolus vulgaris
Phvul.006G159900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 26412184-26413183 Phaseolus vulgaris
Phvul.006G159900 2.0kb upstream 2.0kb upstream 5886 true Chr06: 26406298-26412183 Phaseolus vulgaris
Phvul.006G159900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 26406298-26408297 Phaseolus vulgaris
Phvul.006G159900 2.0kb downstream 2.0kb downstream 5886 true Chr06: 26408298-26414183 Phaseolus vulgaris
Phvul.006G159900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 26412184-26414183 Phaseolus vulgaris
Phvul.006G159900 5.0kb upstream 5.0kb upstream 8886 true Chr06: 26403298-26412183 Phaseolus vulgaris
Phvul.006G159900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 26403298-26408297 Phaseolus vulgaris
Phvul.006G159900 5.0kb downstream 5.0kb downstream 8886 true Chr06: 26408298-26417183 Phaseolus vulgaris
Phvul.006G159900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 26412184-26417183 Phaseolus vulgaris
Phvul.006G159900 10.0kb upstream 10.0kb upstream 13886 true Chr06: 26398298-26412183 Phaseolus vulgaris
Phvul.006G159900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 26398298-26408297 Phaseolus vulgaris
Phvul.006G159900 10.0kb downstream 10.0kb downstream 13886 true Chr06: 26408298-26422183 Phaseolus vulgaris
Phvul.006G159900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 26412184-26422183 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310498 5265 Fabidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.440579 0.0 1.58225    
cufflinks 4.79697 0.0 13.2811   High
cufflinks 0.467751 0.0 1.66598 Low  
cufflinks 0.669758 0.0 2.31363    
cufflinks 0.235626 0.0 0.895412 Low  
cufflinks 0.238689 0.0 0.902608 Low  
cufflinks 0.805797 0.0 2.70703    
cufflinks 2.12144 0.0 6.38184   High
cufflinks 0.371935 0.0 1.35462 Low  
cufflinks 0.229038 0.0 0.870351 Low  
cufflinks 0.279975 0.0 1.04814 Low  

0 Strain