Gene : Phvul.009G054800 P. vulgaris v2.1
Defline:  (1 of 1) 2.5.1.22 - Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  554
Name:  ? Phvul.009G054800 Secondary Identifier:  ? PAC:37151052
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARGSPECAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris POLYAMINSYN3-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G054800 0.5kb upstream 0.5kb upstream 7389 true Chr09: 10465162-10472550 Phaseolus vulgaris
Phvul.009G054800 0.5kb upstream 0.5kb upstream 500 false Chr09: 10472051-10472550 Phaseolus vulgaris
Phvul.009G054800 0.5kb downstream 0.5kb downstream 7389 true Chr09: 10464662-10472050 Phaseolus vulgaris
Phvul.009G054800 0.5kb downstream 0.5kb downstream 500 false Chr09: 10464662-10465161 Phaseolus vulgaris
Phvul.009G054800 1.0kb upstream 1.0kb upstream 7889 true Chr09: 10465162-10473050 Phaseolus vulgaris
Phvul.009G054800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 10472051-10473050 Phaseolus vulgaris
Phvul.009G054800 1.0kb downstream 1.0kb downstream 7889 true Chr09: 10464162-10472050 Phaseolus vulgaris
Phvul.009G054800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 10464162-10465161 Phaseolus vulgaris
Phvul.009G054800 2.0kb upstream 2.0kb upstream 8889 true Chr09: 10465162-10474050 Phaseolus vulgaris
Phvul.009G054800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 10472051-10474050 Phaseolus vulgaris
Phvul.009G054800 2.0kb downstream 2.0kb downstream 8889 true Chr09: 10463162-10472050 Phaseolus vulgaris
Phvul.009G054800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 10463162-10465161 Phaseolus vulgaris
Phvul.009G054800 5.0kb upstream 5.0kb upstream 11889 true Chr09: 10465162-10477050 Phaseolus vulgaris
Phvul.009G054800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 10472051-10477050 Phaseolus vulgaris
Phvul.009G054800 5.0kb downstream 5.0kb downstream 11889 true Chr09: 10460162-10472050 Phaseolus vulgaris
Phvul.009G054800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 10460162-10465161 Phaseolus vulgaris
Phvul.009G054800 10.0kb upstream 10.0kb upstream 16889 true Chr09: 10465162-10482050 Phaseolus vulgaris
Phvul.009G054800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 10472051-10482050 Phaseolus vulgaris
Phvul.009G054800 10.0kb downstream 10.0kb downstream 16889 true Chr09: 10455162-10472050 Phaseolus vulgaris
Phvul.009G054800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 10455162-10465161 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304285 5265 Fabidae View MSA
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.2832 0.0 99.2898 High High
cufflinks 39.2885 0.0 101.91 High High
cufflinks 8.0033 0.0 22.1615   Low
cufflinks 29.9312 0.0 77.3859    
cufflinks 19.0149 0.0 49.6383    
cufflinks 17.1726 0.0 44.9834    
cufflinks 10.9072 0.0 29.4661    
cufflinks 8.95511 0.0 24.518   Low
cufflinks 14.8817 0.0 39.3872    
cufflinks 32.2649 0.0 83.4194    
cufflinks 20.3119 0.0 52.8767    

0 Strain