Gene : Phvul.006G162800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23244:SF308 - KELCH REPEAT-CONTAINING PROTEIN Genomic Order:  1625
Name:  ? Phvul.006G162800 Secondary Identifier:  ? PAC:37171598
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G162800 0.5kb upstream 0.5kb upstream 8023 true Chr06: 26603584-26611606 Phaseolus vulgaris
Phvul.006G162800 0.5kb upstream 0.5kb upstream 500 false Chr06: 26603584-26604083 Phaseolus vulgaris
Phvul.006G162800 0.5kb downstream 0.5kb downstream 8023 true Chr06: 26604084-26612106 Phaseolus vulgaris
Phvul.006G162800 0.5kb downstream 0.5kb downstream 500 false Chr06: 26611607-26612106 Phaseolus vulgaris
Phvul.006G162800 1.0kb upstream 1.0kb upstream 8523 true Chr06: 26603084-26611606 Phaseolus vulgaris
Phvul.006G162800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 26603084-26604083 Phaseolus vulgaris
Phvul.006G162800 1.0kb downstream 1.0kb downstream 8523 true Chr06: 26604084-26612606 Phaseolus vulgaris
Phvul.006G162800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 26611607-26612606 Phaseolus vulgaris
Phvul.006G162800 2.0kb upstream 2.0kb upstream 9523 true Chr06: 26602084-26611606 Phaseolus vulgaris
Phvul.006G162800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 26602084-26604083 Phaseolus vulgaris
Phvul.006G162800 2.0kb downstream 2.0kb downstream 9523 true Chr06: 26604084-26613606 Phaseolus vulgaris
Phvul.006G162800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 26611607-26613606 Phaseolus vulgaris
Phvul.006G162800 5.0kb upstream 5.0kb upstream 12523 true Chr06: 26599084-26611606 Phaseolus vulgaris
Phvul.006G162800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 26599084-26604083 Phaseolus vulgaris
Phvul.006G162800 5.0kb downstream 5.0kb downstream 12523 true Chr06: 26604084-26616606 Phaseolus vulgaris
Phvul.006G162800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 26611607-26616606 Phaseolus vulgaris
Phvul.006G162800 10.0kb upstream 10.0kb upstream 17523 true Chr06: 26594084-26611606 Phaseolus vulgaris
Phvul.006G162800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 26594084-26604083 Phaseolus vulgaris
Phvul.006G162800 10.0kb downstream 10.0kb downstream 17523 true Chr06: 26604084-26621606 Phaseolus vulgaris
Phvul.006G162800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 26611607-26621606 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311880 5265 Fabidae View MSA
124062576 5270 Rosid View MSA
123748227 5271 Pentapetalae View MSA
122785945 5272 Eudicot View MSA
122041757 5273 Angiosperm View MSA
121349147 5274 Embryophyte View MSA
123428379 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.34556 0.0 4.21838   Low
cufflinks 5.52019 0.0 14.9682    
cufflinks 16.8694 0.0 43.6275   High
cufflinks 2.28096 0.0 6.78558   Low
cufflinks 3.31544 0.0 9.46072    
cufflinks 13.3303 0.0 34.4874   High
cufflinks 5.11197 0.0 13.9123    
cufflinks 6.74543 0.0 17.9261    
cufflinks 5.09493 0.0 13.8881    
cufflinks 11.7857 0.0 30.5824   High
cufflinks 3.15659 0.0 9.04509    

0 Strain