Gene : Phvul.006G163000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11702:SF20 - GTP-BINDING PROTEIN OBGC, CHLOROPLASTIC Genomic Order:  1627
Name:  ? Phvul.006G163000 Secondary Identifier:  ? PAC:37174096
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G163000 0.5kb upstream 0.5kb upstream 4872 true Chr06: 26620558-26625429 Phaseolus vulgaris
Phvul.006G163000 0.5kb upstream 0.5kb upstream 500 false Chr06: 26620558-26621057 Phaseolus vulgaris
Phvul.006G163000 0.5kb downstream 0.5kb downstream 4872 true Chr06: 26621058-26625929 Phaseolus vulgaris
Phvul.006G163000 0.5kb downstream 0.5kb downstream 500 false Chr06: 26625430-26625929 Phaseolus vulgaris
Phvul.006G163000 1.0kb upstream 1.0kb upstream 5372 true Chr06: 26620058-26625429 Phaseolus vulgaris
Phvul.006G163000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 26620058-26621057 Phaseolus vulgaris
Phvul.006G163000 1.0kb downstream 1.0kb downstream 5372 true Chr06: 26621058-26626429 Phaseolus vulgaris
Phvul.006G163000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 26625430-26626429 Phaseolus vulgaris
Phvul.006G163000 2.0kb upstream 2.0kb upstream 6372 true Chr06: 26619058-26625429 Phaseolus vulgaris
Phvul.006G163000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 26619058-26621057 Phaseolus vulgaris
Phvul.006G163000 2.0kb downstream 2.0kb downstream 6372 true Chr06: 26621058-26627429 Phaseolus vulgaris
Phvul.006G163000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 26625430-26627429 Phaseolus vulgaris
Phvul.006G163000 5.0kb upstream 5.0kb upstream 9372 true Chr06: 26616058-26625429 Phaseolus vulgaris
Phvul.006G163000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 26616058-26621057 Phaseolus vulgaris
Phvul.006G163000 5.0kb downstream 5.0kb downstream 9372 true Chr06: 26621058-26630429 Phaseolus vulgaris
Phvul.006G163000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 26625430-26630429 Phaseolus vulgaris
Phvul.006G163000 10.0kb upstream 10.0kb upstream 14372 true Chr06: 26611058-26625429 Phaseolus vulgaris
Phvul.006G163000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 26611058-26621057 Phaseolus vulgaris
Phvul.006G163000 10.0kb downstream 10.0kb downstream 14372 true Chr06: 26621058-26635429 Phaseolus vulgaris
Phvul.006G163000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 26625430-26635429 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041071 5273 Angiosperm View MSA
122303867 5265 Fabidae View MSA
124062499 5270 Rosid View MSA
123739665 5271 Pentapetalae View MSA
122793688 5272 Eudicot View MSA
121346272 5274 Embryophyte View MSA
123428506 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.2853 0.0 29.6792    
cufflinks 9.04879 0.0 26.5573    
cufflinks 40.2273 0.0 128.109 High High
cufflinks 6.39853 0.0 21.5951    
cufflinks 8.04061 0.0 26.8524    
cufflinks 20.595 0.0 67.321   High
cufflinks 3.57374 0.0 11.3221   Low
cufflinks 3.47676 0.0 11.6822   Low
cufflinks 2.85524 0.0 9.52282   Low
cufflinks 11.5329 0.0 36.6378    
cufflinks 5.78304 0.0 17.5574    

0 Strain