Gene : Phvul.009G040900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12197:SF173 - CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  409
Name:  ? Phvul.009G040900 Secondary Identifier:  ? PAC:37151838
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G040900 0.5kb upstream 0.5kb upstream 19383 true Chr09: 8420246-8439628 Phaseolus vulgaris
Phvul.009G040900 0.5kb upstream 0.5kb upstream 500 false Chr09: 8420246-8420745 Phaseolus vulgaris
Phvul.009G040900 0.5kb downstream 0.5kb downstream 19383 true Chr09: 8420746-8440128 Phaseolus vulgaris
Phvul.009G040900 0.5kb downstream 0.5kb downstream 500 false Chr09: 8439629-8440128 Phaseolus vulgaris
Phvul.009G040900 1.0kb upstream 1.0kb upstream 19883 true Chr09: 8419746-8439628 Phaseolus vulgaris
Phvul.009G040900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 8419746-8420745 Phaseolus vulgaris
Phvul.009G040900 1.0kb downstream 1.0kb downstream 19883 true Chr09: 8420746-8440628 Phaseolus vulgaris
Phvul.009G040900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 8439629-8440628 Phaseolus vulgaris
Phvul.009G040900 2.0kb upstream 2.0kb upstream 20883 true Chr09: 8418746-8439628 Phaseolus vulgaris
Phvul.009G040900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 8418746-8420745 Phaseolus vulgaris
Phvul.009G040900 2.0kb downstream 2.0kb downstream 20883 true Chr09: 8420746-8441628 Phaseolus vulgaris
Phvul.009G040900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 8439629-8441628 Phaseolus vulgaris
Phvul.009G040900 5.0kb upstream 5.0kb upstream 23883 true Chr09: 8415746-8439628 Phaseolus vulgaris
Phvul.009G040900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 8415746-8420745 Phaseolus vulgaris
Phvul.009G040900 5.0kb downstream 5.0kb downstream 23883 true Chr09: 8420746-8444628 Phaseolus vulgaris
Phvul.009G040900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 8439629-8444628 Phaseolus vulgaris
Phvul.009G040900 10.0kb upstream 10.0kb upstream 28883 true Chr09: 8410746-8439628 Phaseolus vulgaris
Phvul.009G040900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 8410746-8420745 Phaseolus vulgaris
Phvul.009G040900 10.0kb downstream 10.0kb downstream 28883 true Chr09: 8420746-8449628 Phaseolus vulgaris
Phvul.009G040900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 8439629-8449628 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307507 5265 Fabidae View MSA
124072039 5270 Rosid View MSA
123748863 5271 Pentapetalae View MSA
122787018 5272 Eudicot View MSA
122047928 5273 Angiosperm View MSA
121346419 5274 Embryophyte View MSA
123428850 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.835297 0.0 4.16829    
cufflinks 0.77426 0.0 3.93537   Low
cufflinks 1.60934 0.0 6.81268    
cufflinks 1.00299 0.0 4.9298    
cufflinks 0.818175 0.0 4.32208   Low
cufflinks 1.69328 0.0 7.03049    
cufflinks 1.76541 0.0 7.31676    
cufflinks 1.89689 0.0 7.5638   High
cufflinks 1.42451 0.0 6.4055    
cufflinks 1.68276 0.0 7.08297    
cufflinks 0.741035 0.0 3.88581   Low

0 Strain