Gene : Phvul.009G041000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31008//PTHR31008:SF5 - COP1-INTERACTING PROTEIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  410
Name:  ? Phvul.009G041000 Secondary Identifier:  ? PAC:37150954
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G041000 0.5kb upstream 0.5kb upstream 8433 true Chr09: 8440464-8448896 Phaseolus vulgaris
Phvul.009G041000 0.5kb upstream 0.5kb upstream 500 false Chr09: 8448397-8448896 Phaseolus vulgaris
Phvul.009G041000 0.5kb downstream 0.5kb downstream 8433 true Chr09: 8439964-8448396 Phaseolus vulgaris
Phvul.009G041000 0.5kb downstream 0.5kb downstream 500 false Chr09: 8439964-8440463 Phaseolus vulgaris
Phvul.009G041000 1.0kb upstream 1.0kb upstream 8933 true Chr09: 8440464-8449396 Phaseolus vulgaris
Phvul.009G041000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 8448397-8449396 Phaseolus vulgaris
Phvul.009G041000 1.0kb downstream 1.0kb downstream 8933 true Chr09: 8439464-8448396 Phaseolus vulgaris
Phvul.009G041000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 8439464-8440463 Phaseolus vulgaris
Phvul.009G041000 2.0kb upstream 2.0kb upstream 9933 true Chr09: 8440464-8450396 Phaseolus vulgaris
Phvul.009G041000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 8448397-8450396 Phaseolus vulgaris
Phvul.009G041000 2.0kb downstream 2.0kb downstream 9933 true Chr09: 8438464-8448396 Phaseolus vulgaris
Phvul.009G041000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 8438464-8440463 Phaseolus vulgaris
Phvul.009G041000 5.0kb upstream 5.0kb upstream 12933 true Chr09: 8440464-8453396 Phaseolus vulgaris
Phvul.009G041000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 8448397-8453396 Phaseolus vulgaris
Phvul.009G041000 5.0kb downstream 5.0kb downstream 12933 true Chr09: 8435464-8448396 Phaseolus vulgaris
Phvul.009G041000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 8435464-8440463 Phaseolus vulgaris
Phvul.009G041000 10.0kb upstream 10.0kb upstream 17933 true Chr09: 8440464-8458396 Phaseolus vulgaris
Phvul.009G041000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 8448397-8458396 Phaseolus vulgaris
Phvul.009G041000 10.0kb downstream 10.0kb downstream 17933 true Chr09: 8430464-8448396 Phaseolus vulgaris
Phvul.009G041000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 8430464-8440463 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303099 5265 Fabidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.31084 0.0 9.14615   Low
cufflinks 12.0974 0.0 38.4855    
cufflinks 25.1907 0.0 86.691   High
cufflinks 5.19578 0.0 17.6736   Low
cufflinks 12.9081 0.0 41.0657    
cufflinks 28.6125 0.0 100.343   High
cufflinks 13.2627 0.0 42.3942    
cufflinks 12.1464 0.0 38.6812    
cufflinks 11.7294 0.0 37.3039    
cufflinks 20.2223 0.0 66.5318    
cufflinks 13.5607 0.0 43.194    

0 Strain