Gene : Phvul.006G151600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22763:SF65 - E3 UBIQUITIN-PROTEIN LIGASE RHF1A Genomic Order:  1514
Name:  ? Phvul.006G151600 Secondary Identifier:  ? PAC:37174086
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G151600 0.5kb upstream 0.5kb upstream 3155 true Chr06: 25696349-25699503 Phaseolus vulgaris
Phvul.006G151600 0.5kb upstream 0.5kb upstream 500 false Chr06: 25696349-25696848 Phaseolus vulgaris
Phvul.006G151600 0.5kb downstream 0.5kb downstream 3155 true Chr06: 25696849-25700003 Phaseolus vulgaris
Phvul.006G151600 0.5kb downstream 0.5kb downstream 500 false Chr06: 25699504-25700003 Phaseolus vulgaris
Phvul.006G151600 1.0kb upstream 1.0kb upstream 3655 true Chr06: 25695849-25699503 Phaseolus vulgaris
Phvul.006G151600 1.0kb upstream 1.0kb upstream 1000 false Chr06: 25695849-25696848 Phaseolus vulgaris
Phvul.006G151600 1.0kb downstream 1.0kb downstream 3655 true Chr06: 25696849-25700503 Phaseolus vulgaris
Phvul.006G151600 1.0kb downstream 1.0kb downstream 1000 false Chr06: 25699504-25700503 Phaseolus vulgaris
Phvul.006G151600 2.0kb upstream 2.0kb upstream 4655 true Chr06: 25694849-25699503 Phaseolus vulgaris
Phvul.006G151600 2.0kb upstream 2.0kb upstream 2000 false Chr06: 25694849-25696848 Phaseolus vulgaris
Phvul.006G151600 2.0kb downstream 2.0kb downstream 4655 true Chr06: 25696849-25701503 Phaseolus vulgaris
Phvul.006G151600 2.0kb downstream 2.0kb downstream 2000 false Chr06: 25699504-25701503 Phaseolus vulgaris
Phvul.006G151600 5.0kb upstream 5.0kb upstream 7655 true Chr06: 25691849-25699503 Phaseolus vulgaris
Phvul.006G151600 5.0kb upstream 5.0kb upstream 5000 false Chr06: 25691849-25696848 Phaseolus vulgaris
Phvul.006G151600 5.0kb downstream 5.0kb downstream 7655 true Chr06: 25696849-25704503 Phaseolus vulgaris
Phvul.006G151600 5.0kb downstream 5.0kb downstream 5000 false Chr06: 25699504-25704503 Phaseolus vulgaris
Phvul.006G151600 10.0kb upstream 10.0kb upstream 12655 true Chr06: 25686849-25699503 Phaseolus vulgaris
Phvul.006G151600 10.0kb upstream 10.0kb upstream 10000 false Chr06: 25686849-25696848 Phaseolus vulgaris
Phvul.006G151600 10.0kb downstream 10.0kb downstream 12655 true Chr06: 25696849-25709503 Phaseolus vulgaris
Phvul.006G151600 10.0kb downstream 10.0kb downstream 10000 false Chr06: 25699504-25709503 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791776 5273 Angiosperm View MSA
122305958 5265 Fabidae View MSA
124067987 5270 Rosid View MSA
123741405 5271 Pentapetalae View MSA
122791979 5272 Eudicot View MSA
121350334 5274 Embryophyte View MSA
123381683 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.3836 0.0 145.705 High High
cufflinks 19.8496 0.0 67.783    
cufflinks 12.2559 0.0 44.6918   Low
cufflinks 14.8399 0.0 45.2121    
cufflinks 16.1532 0.0 48.8532    
cufflinks 12.2026 0.0 38.5446   Low
cufflinks 15.6849 0.0 55.3966    
cufflinks 17.0921 0.0 58.9169    
cufflinks 15.0838 0.0 45.9167    
cufflinks 24.9994 0.0 83.4168    
cufflinks 16.882 0.0 50.9413    

0 Strain