Gene : Phvul.006G154200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11088//PTHR11088:SF34 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1540
Name:  ? Phvul.006G154200 Secondary Identifier:  ? PAC:37174010
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-2681 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G154200 0.5kb upstream 0.5kb upstream 2279 true Chr06: 25934151-25936429 Phaseolus vulgaris
Phvul.006G154200 0.5kb upstream 0.5kb upstream 500 false Chr06: 25934151-25934650 Phaseolus vulgaris
Phvul.006G154200 0.5kb downstream 0.5kb downstream 2279 true Chr06: 25934651-25936929 Phaseolus vulgaris
Phvul.006G154200 0.5kb downstream 0.5kb downstream 500 false Chr06: 25936430-25936929 Phaseolus vulgaris
Phvul.006G154200 1.0kb upstream 1.0kb upstream 2779 true Chr06: 25933651-25936429 Phaseolus vulgaris
Phvul.006G154200 1.0kb upstream 1.0kb upstream 1000 false Chr06: 25933651-25934650 Phaseolus vulgaris
Phvul.006G154200 1.0kb downstream 1.0kb downstream 2779 true Chr06: 25934651-25937429 Phaseolus vulgaris
Phvul.006G154200 1.0kb downstream 1.0kb downstream 1000 false Chr06: 25936430-25937429 Phaseolus vulgaris
Phvul.006G154200 2.0kb upstream 2.0kb upstream 3779 true Chr06: 25932651-25936429 Phaseolus vulgaris
Phvul.006G154200 2.0kb upstream 2.0kb upstream 2000 false Chr06: 25932651-25934650 Phaseolus vulgaris
Phvul.006G154200 2.0kb downstream 2.0kb downstream 3779 true Chr06: 25934651-25938429 Phaseolus vulgaris
Phvul.006G154200 2.0kb downstream 2.0kb downstream 2000 false Chr06: 25936430-25938429 Phaseolus vulgaris
Phvul.006G154200 5.0kb upstream 5.0kb upstream 6779 true Chr06: 25929651-25936429 Phaseolus vulgaris
Phvul.006G154200 5.0kb upstream 5.0kb upstream 5000 false Chr06: 25929651-25934650 Phaseolus vulgaris
Phvul.006G154200 5.0kb downstream 5.0kb downstream 6779 true Chr06: 25934651-25941429 Phaseolus vulgaris
Phvul.006G154200 5.0kb downstream 5.0kb downstream 5000 false Chr06: 25936430-25941429 Phaseolus vulgaris
Phvul.006G154200 10.0kb upstream 10.0kb upstream 11779 true Chr06: 25924651-25936429 Phaseolus vulgaris
Phvul.006G154200 10.0kb upstream 10.0kb upstream 10000 false Chr06: 25924651-25934650 Phaseolus vulgaris
Phvul.006G154200 10.0kb downstream 10.0kb downstream 11779 true Chr06: 25934651-25946429 Phaseolus vulgaris
Phvul.006G154200 10.0kb downstream 10.0kb downstream 10000 false Chr06: 25936430-25946429 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313090 5265 Fabidae View MSA
124067788 5270 Rosid View MSA
123742235 5271 Pentapetalae View MSA
122793817 5272 Eudicot View MSA
122042275 5273 Angiosperm View MSA
121309945 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.43975 0.0 4.83415    
cufflinks 0.519497 0.0 1.93391    
cufflinks 0.280387 0.0 1.0996 Low Low
cufflinks 1.55591 0.0 5.13371    
cufflinks 15.2965 0.0 40.3696   High
cufflinks 0.113718 0.0 0.477987 Low Low
cufflinks 5.7589 0.0 16.429    
cufflinks 1.96429 0.0 6.37741    
cufflinks 8.07079 0.0 22.3121    
cufflinks 15.792 0.0 41.7288   High
cufflinks 22.7522 0.0 58.9951   High

0 Strain