Gene : Phvul.006G153900 P. vulgaris v2.1
Defline:  (1 of 4) KOG3140 - Predicted membrane protein Genomic Order:  1537
Name:  ? Phvul.006G153900 Secondary Identifier:  ? PAC:37171889
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G153900 0.5kb upstream 0.5kb upstream 8213 true Chr06: 25898016-25906228 Phaseolus vulgaris
Phvul.006G153900 0.5kb upstream 0.5kb upstream 500 false Chr06: 25905729-25906228 Phaseolus vulgaris
Phvul.006G153900 0.5kb downstream 0.5kb downstream 8213 true Chr06: 25897516-25905728 Phaseolus vulgaris
Phvul.006G153900 0.5kb downstream 0.5kb downstream 500 false Chr06: 25897516-25898015 Phaseolus vulgaris
Phvul.006G153900 1.0kb upstream 1.0kb upstream 8713 true Chr06: 25898016-25906728 Phaseolus vulgaris
Phvul.006G153900 1.0kb upstream 1.0kb upstream 1000 false Chr06: 25905729-25906728 Phaseolus vulgaris
Phvul.006G153900 1.0kb downstream 1.0kb downstream 8713 true Chr06: 25897016-25905728 Phaseolus vulgaris
Phvul.006G153900 1.0kb downstream 1.0kb downstream 1000 false Chr06: 25897016-25898015 Phaseolus vulgaris
Phvul.006G153900 2.0kb upstream 2.0kb upstream 9713 true Chr06: 25898016-25907728 Phaseolus vulgaris
Phvul.006G153900 2.0kb upstream 2.0kb upstream 2000 false Chr06: 25905729-25907728 Phaseolus vulgaris
Phvul.006G153900 2.0kb downstream 2.0kb downstream 9713 true Chr06: 25896016-25905728 Phaseolus vulgaris
Phvul.006G153900 2.0kb downstream 2.0kb downstream 2000 false Chr06: 25896016-25898015 Phaseolus vulgaris
Phvul.006G153900 5.0kb upstream 5.0kb upstream 12713 true Chr06: 25898016-25910728 Phaseolus vulgaris
Phvul.006G153900 5.0kb upstream 5.0kb upstream 5000 false Chr06: 25905729-25910728 Phaseolus vulgaris
Phvul.006G153900 5.0kb downstream 5.0kb downstream 12713 true Chr06: 25893016-25905728 Phaseolus vulgaris
Phvul.006G153900 5.0kb downstream 5.0kb downstream 5000 false Chr06: 25893016-25898015 Phaseolus vulgaris
Phvul.006G153900 10.0kb upstream 10.0kb upstream 17713 true Chr06: 25898016-25915728 Phaseolus vulgaris
Phvul.006G153900 10.0kb upstream 10.0kb upstream 10000 false Chr06: 25905729-25915728 Phaseolus vulgaris
Phvul.006G153900 10.0kb downstream 10.0kb downstream 17713 true Chr06: 25888016-25905728 Phaseolus vulgaris
Phvul.006G153900 10.0kb downstream 10.0kb downstream 10000 false Chr06: 25888016-25898015 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310014 5265 Fabidae View MSA
124066129 5270 Rosid View MSA
123740563 5271 Pentapetalae View MSA
122790224 5272 Eudicot View MSA
122051271 5273 Angiosperm View MSA
121349848 5274 Embryophyte View MSA
123428145 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.9676 0.0 108.563 High High
cufflinks 19.5724 0.0 51.5499    
cufflinks 19.4213 0.0 51.2379    
cufflinks 30.3249 0.0 78.584    
cufflinks 28.0488 0.0 72.7752    
cufflinks 14.5791 0.0 39.2467   Low
cufflinks 19.358 0.0 51.0101    
cufflinks 13.3979 0.0 36.2067   Low
cufflinks 20.713 0.0 54.4732    
cufflinks 25.1696 0.0 65.4732    
cufflinks 27.666 0.0 71.7993    

0 Strain