Gene : Phvul.006G156400 P. vulgaris v2.1
Defline:  (1 of 2) 1.10.3.2//1.10.3.3 - Laccase / Urishiol oxidase // L-ascorbate oxidase / Ascorbase Genomic Order:  1562
Name:  ? Phvul.006G156400 Secondary Identifier:  ? PAC:37171624
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5466 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6824 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G156400 0.5kb upstream 0.5kb upstream 1523 true Chr06: 26146200-26147722 Phaseolus vulgaris
Phvul.006G156400 0.5kb upstream 0.5kb upstream 500 false Chr06: 26147223-26147722 Phaseolus vulgaris
Phvul.006G156400 0.5kb downstream 0.5kb downstream 1523 true Chr06: 26145700-26147222 Phaseolus vulgaris
Phvul.006G156400 0.5kb downstream 0.5kb downstream 500 false Chr06: 26145700-26146199 Phaseolus vulgaris
Phvul.006G156400 1.0kb upstream 1.0kb upstream 2023 true Chr06: 26146200-26148222 Phaseolus vulgaris
Phvul.006G156400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 26147223-26148222 Phaseolus vulgaris
Phvul.006G156400 1.0kb downstream 1.0kb downstream 2023 true Chr06: 26145200-26147222 Phaseolus vulgaris
Phvul.006G156400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 26145200-26146199 Phaseolus vulgaris
Phvul.006G156400 2.0kb upstream 2.0kb upstream 3023 true Chr06: 26146200-26149222 Phaseolus vulgaris
Phvul.006G156400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 26147223-26149222 Phaseolus vulgaris
Phvul.006G156400 2.0kb downstream 2.0kb downstream 3023 true Chr06: 26144200-26147222 Phaseolus vulgaris
Phvul.006G156400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 26144200-26146199 Phaseolus vulgaris
Phvul.006G156400 5.0kb upstream 5.0kb upstream 6023 true Chr06: 26146200-26152222 Phaseolus vulgaris
Phvul.006G156400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 26147223-26152222 Phaseolus vulgaris
Phvul.006G156400 5.0kb downstream 5.0kb downstream 6023 true Chr06: 26141200-26147222 Phaseolus vulgaris
Phvul.006G156400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 26141200-26146199 Phaseolus vulgaris
Phvul.006G156400 10.0kb upstream 10.0kb upstream 11023 true Chr06: 26146200-26157222 Phaseolus vulgaris
Phvul.006G156400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 26147223-26157222 Phaseolus vulgaris
Phvul.006G156400 10.0kb downstream 10.0kb downstream 11023 true Chr06: 26136200-26147222 Phaseolus vulgaris
Phvul.006G156400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 26136200-26146199 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313531 5265 Fabidae View MSA
124074163 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.496406 0.0 2.0331   Low
cufflinks 0.688171 0.0 2.75479    
cufflinks 2.38236 0.0 8.60559    
cufflinks 0.399588 0.0 1.67631 Low Low
cufflinks 1.32793 0.0 5.08477    
cufflinks 1.96783 0.0 7.23458    
cufflinks 2.19515 0.0 7.99403    
cufflinks 1.71669 0.0 6.37566    
cufflinks 1.32028 0.0 5.02008    
cufflinks 2.78522 0.0 9.96844   High
cufflinks 0.90904 0.0 3.57092    

0 Strain