Gene : Phvul.006G155800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR20852:SF53 - GLUTAMINE SYNTHETASE, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  1556
Name:  ? Phvul.006G155800 Secondary Identifier:  ? PAC:37173130
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLNSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-3282 Phaseolus vulgaris pathologic  
Pvulgaris PWY-381 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6549 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6963 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6964 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G155800 0.5kb upstream 0.5kb upstream 6811 true Chr06: 26078842-26085652 Phaseolus vulgaris
Phvul.006G155800 0.5kb upstream 0.5kb upstream 500 false Chr06: 26078842-26079341 Phaseolus vulgaris
Phvul.006G155800 0.5kb downstream 0.5kb downstream 6811 true Chr06: 26079342-26086152 Phaseolus vulgaris
Phvul.006G155800 0.5kb downstream 0.5kb downstream 500 false Chr06: 26085653-26086152 Phaseolus vulgaris
Phvul.006G155800 1.0kb upstream 1.0kb upstream 7311 true Chr06: 26078342-26085652 Phaseolus vulgaris
Phvul.006G155800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 26078342-26079341 Phaseolus vulgaris
Phvul.006G155800 1.0kb downstream 1.0kb downstream 7311 true Chr06: 26079342-26086652 Phaseolus vulgaris
Phvul.006G155800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 26085653-26086652 Phaseolus vulgaris
Phvul.006G155800 2.0kb upstream 2.0kb upstream 8311 true Chr06: 26077342-26085652 Phaseolus vulgaris
Phvul.006G155800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 26077342-26079341 Phaseolus vulgaris
Phvul.006G155800 2.0kb downstream 2.0kb downstream 8311 true Chr06: 26079342-26087652 Phaseolus vulgaris
Phvul.006G155800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 26085653-26087652 Phaseolus vulgaris
Phvul.006G155800 5.0kb upstream 5.0kb upstream 11311 true Chr06: 26074342-26085652 Phaseolus vulgaris
Phvul.006G155800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 26074342-26079341 Phaseolus vulgaris
Phvul.006G155800 5.0kb downstream 5.0kb downstream 11311 true Chr06: 26079342-26090652 Phaseolus vulgaris
Phvul.006G155800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 26085653-26090652 Phaseolus vulgaris
Phvul.006G155800 10.0kb upstream 10.0kb upstream 16311 true Chr06: 26069342-26085652 Phaseolus vulgaris
Phvul.006G155800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 26069342-26079341 Phaseolus vulgaris
Phvul.006G155800 10.0kb downstream 10.0kb downstream 16311 true Chr06: 26079342-26095652 Phaseolus vulgaris
Phvul.006G155800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 26085653-26095652 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301518 5265 Fabidae View MSA
124069672 5270 Rosid View MSA
123741738 5271 Pentapetalae View MSA
122788688 5272 Eudicot View MSA
122046528 5273 Angiosperm View MSA
121310618 5274 Embryophyte View MSA
123428761 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.3687 0.0 90.8311    
cufflinks 109.408 0.0 617.854 High  
cufflinks 1683.78 0.0 41399.2 High High
cufflinks 56.4239 0.0 225.813 High  
cufflinks 103.58 0.0 532.186 High  
cufflinks 509.184 0.0 5602.44 High High
cufflinks 7.30617 0.0 27.599   Low
cufflinks 26.7803 0.0 103.455    
cufflinks 9.18145 0.0 40.2171   Low
cufflinks 53.4719 0.0 263.878 High  
cufflinks 68.5822 0.0 313.468 High  

0 Strain