Gene : Phvul.009G047600 P. vulgaris v2.1
Defline:  (1 of 11) KOG3399 - Predicted Yippee-type zinc-binding protein Genomic Order:  478
Name:  ? Phvul.009G047600 Secondary Identifier:  ? PAC:37149497
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G047600 0.5kb upstream 0.5kb upstream 2720 true Chr09: 9411148-9413867 Phaseolus vulgaris
Phvul.009G047600 0.5kb upstream 0.5kb upstream 500 false Chr09: 9413368-9413867 Phaseolus vulgaris
Phvul.009G047600 0.5kb downstream 0.5kb downstream 2720 true Chr09: 9410648-9413367 Phaseolus vulgaris
Phvul.009G047600 0.5kb downstream 0.5kb downstream 500 false Chr09: 9410648-9411147 Phaseolus vulgaris
Phvul.009G047600 1.0kb upstream 1.0kb upstream 3220 true Chr09: 9411148-9414367 Phaseolus vulgaris
Phvul.009G047600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 9413368-9414367 Phaseolus vulgaris
Phvul.009G047600 1.0kb downstream 1.0kb downstream 3220 true Chr09: 9410148-9413367 Phaseolus vulgaris
Phvul.009G047600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 9410148-9411147 Phaseolus vulgaris
Phvul.009G047600 2.0kb upstream 2.0kb upstream 4220 true Chr09: 9411148-9415367 Phaseolus vulgaris
Phvul.009G047600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 9413368-9415367 Phaseolus vulgaris
Phvul.009G047600 2.0kb downstream 2.0kb downstream 4220 true Chr09: 9409148-9413367 Phaseolus vulgaris
Phvul.009G047600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 9409148-9411147 Phaseolus vulgaris
Phvul.009G047600 5.0kb upstream 5.0kb upstream 7220 true Chr09: 9411148-9418367 Phaseolus vulgaris
Phvul.009G047600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 9413368-9418367 Phaseolus vulgaris
Phvul.009G047600 5.0kb downstream 5.0kb downstream 7220 true Chr09: 9406148-9413367 Phaseolus vulgaris
Phvul.009G047600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 9406148-9411147 Phaseolus vulgaris
Phvul.009G047600 10.0kb upstream 10.0kb upstream 12220 true Chr09: 9411148-9423367 Phaseolus vulgaris
Phvul.009G047600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 9413368-9423367 Phaseolus vulgaris
Phvul.009G047600 10.0kb downstream 10.0kb downstream 12220 true Chr09: 9401148-9413367 Phaseolus vulgaris
Phvul.009G047600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 9401148-9411147 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041337 5273 Angiosperm View MSA
122303063 5265 Fabidae View MSA
124072414 5270 Rosid View MSA
123752615 5271 Pentapetalae View MSA
122791285 5272 Eudicot View MSA
123428914 5275 Viridiplantae View MSA
121343957 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.8154 0.0 144.422 High High
cufflinks 11.5742 0.0 46.6626    
cufflinks 6.10309 0.0 32.0855   Low
cufflinks 17.122 0.0 66.0155    
cufflinks 10.0697 0.0 42.4415    
cufflinks 8.01903 0.0 35.945    
cufflinks 13.8374 0.0 50.5418    
cufflinks 14.7411 0.0 56.5895    
cufflinks 13.0582 0.0 50.0912    
cufflinks 20.673 0.0 76.4409    
cufflinks 10.0267 0.0 42.4437    

0 Strain