Gene : Phvul.009G034500 P. vulgaris v2.1
Defline:  (1 of 425) PF01535 - PPR repeat (PPR) Genomic Order:  344
Name:  ? Phvul.009G034500 Secondary Identifier:  ? PAC:37149279
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G034500 0.5kb upstream 0.5kb upstream 8777 true Chr09: 7639309-7648085 Phaseolus vulgaris
Phvul.009G034500 0.5kb upstream 0.5kb upstream 500 false Chr09: 7639309-7639808 Phaseolus vulgaris
Phvul.009G034500 0.5kb downstream 0.5kb downstream 8777 true Chr09: 7639809-7648585 Phaseolus vulgaris
Phvul.009G034500 0.5kb downstream 0.5kb downstream 500 false Chr09: 7648086-7648585 Phaseolus vulgaris
Phvul.009G034500 1.0kb upstream 1.0kb upstream 9277 true Chr09: 7638809-7648085 Phaseolus vulgaris
Phvul.009G034500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 7638809-7639808 Phaseolus vulgaris
Phvul.009G034500 1.0kb downstream 1.0kb downstream 9277 true Chr09: 7639809-7649085 Phaseolus vulgaris
Phvul.009G034500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 7648086-7649085 Phaseolus vulgaris
Phvul.009G034500 2.0kb upstream 2.0kb upstream 10277 true Chr09: 7637809-7648085 Phaseolus vulgaris
Phvul.009G034500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 7637809-7639808 Phaseolus vulgaris
Phvul.009G034500 2.0kb downstream 2.0kb downstream 10277 true Chr09: 7639809-7650085 Phaseolus vulgaris
Phvul.009G034500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 7648086-7650085 Phaseolus vulgaris
Phvul.009G034500 5.0kb upstream 5.0kb upstream 13277 true Chr09: 7634809-7648085 Phaseolus vulgaris
Phvul.009G034500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 7634809-7639808 Phaseolus vulgaris
Phvul.009G034500 5.0kb downstream 5.0kb downstream 13277 true Chr09: 7639809-7653085 Phaseolus vulgaris
Phvul.009G034500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 7648086-7653085 Phaseolus vulgaris
Phvul.009G034500 10.0kb upstream 10.0kb upstream 18277 true Chr09: 7629809-7648085 Phaseolus vulgaris
Phvul.009G034500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 7629809-7639808 Phaseolus vulgaris
Phvul.009G034500 10.0kb downstream 10.0kb downstream 18277 true Chr09: 7639809-7658085 Phaseolus vulgaris
Phvul.009G034500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 7648086-7658085 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307467 5265 Fabidae View MSA
124062477 5270 Rosid View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.880311 0.0 4.42306    
cufflinks 0.85225 0.0 4.49601    
cufflinks 1.36253 0.0 6.71631   High
cufflinks 0.618182 0.0 3.71188    
cufflinks 0.711867 0.0 2.86266    
cufflinks 1.59754 0.0 7.3207   High
cufflinks 0.806962 0.0 3.10306    
cufflinks 0.880566 0.0 4.79692    
cufflinks 0.771543 0.0 4.91563    
cufflinks 0.559113 0.0 5.54431   Low
cufflinks 0.670616 0.0 3.71503    

0 Strain