Gene : Phvul.006G141700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31636:SF45 - SCARECROW-LIKE PROTEIN 13 Genomic Order:  1412
Name:  ? Phvul.006G141700 Secondary Identifier:  ? PAC:37171794
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G141700 0.5kb upstream 0.5kb upstream 4208 true Chr06: 24797294-24801501 Phaseolus vulgaris
Phvul.006G141700 0.5kb upstream 0.5kb upstream 500 false Chr06: 24797294-24797793 Phaseolus vulgaris
Phvul.006G141700 0.5kb downstream 0.5kb downstream 4208 true Chr06: 24797794-24802001 Phaseolus vulgaris
Phvul.006G141700 0.5kb downstream 0.5kb downstream 500 false Chr06: 24801502-24802001 Phaseolus vulgaris
Phvul.006G141700 1.0kb upstream 1.0kb upstream 4708 true Chr06: 24796794-24801501 Phaseolus vulgaris
Phvul.006G141700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 24796794-24797793 Phaseolus vulgaris
Phvul.006G141700 1.0kb downstream 1.0kb downstream 4708 true Chr06: 24797794-24802501 Phaseolus vulgaris
Phvul.006G141700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 24801502-24802501 Phaseolus vulgaris
Phvul.006G141700 2.0kb upstream 2.0kb upstream 5708 true Chr06: 24795794-24801501 Phaseolus vulgaris
Phvul.006G141700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 24795794-24797793 Phaseolus vulgaris
Phvul.006G141700 2.0kb downstream 2.0kb downstream 5708 true Chr06: 24797794-24803501 Phaseolus vulgaris
Phvul.006G141700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 24801502-24803501 Phaseolus vulgaris
Phvul.006G141700 5.0kb upstream 5.0kb upstream 8708 true Chr06: 24792794-24801501 Phaseolus vulgaris
Phvul.006G141700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 24792794-24797793 Phaseolus vulgaris
Phvul.006G141700 5.0kb downstream 5.0kb downstream 8708 true Chr06: 24797794-24806501 Phaseolus vulgaris
Phvul.006G141700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 24801502-24806501 Phaseolus vulgaris
Phvul.006G141700 10.0kb upstream 10.0kb upstream 13708 true Chr06: 24787794-24801501 Phaseolus vulgaris
Phvul.006G141700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 24787794-24797793 Phaseolus vulgaris
Phvul.006G141700 10.0kb downstream 10.0kb downstream 13708 true Chr06: 24797794-24811501 Phaseolus vulgaris
Phvul.006G141700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 24801502-24811501 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310892 5265 Fabidae View MSA
124063713 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.4899 0.0 22.7386    
cufflinks 10.1751 0.0 26.8867    
cufflinks 9.33479 0.0 24.7723    
cufflinks 5.13218 0.0 14.3915    
cufflinks 4.55051 0.0 12.9327   Low
cufflinks 5.69473 0.0 15.7549    
cufflinks 11.8048 0.0 30.9001    
cufflinks 9.85931 0.0 26.0565    
cufflinks 4.77782 0.0 13.4277    
cufflinks 31.8945 0.0 83.1568   High
cufflinks 5.71265 0.0 15.8634    

0 Strain