Gene : Phvul.006G145800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11850:SF100 - HOMEOBOX PROTEIN SHOOT MERISTEMLESS Genomic Order:  1453
Name:  ? Phvul.006G145800 Secondary Identifier:  ? PAC:37172010
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G145800 0.5kb upstream 0.5kb upstream 7167 true Chr06: 25179952-25187118 Phaseolus vulgaris
Phvul.006G145800 0.5kb upstream 0.5kb upstream 500 false Chr06: 25179952-25180451 Phaseolus vulgaris
Phvul.006G145800 0.5kb downstream 0.5kb downstream 7167 true Chr06: 25180452-25187618 Phaseolus vulgaris
Phvul.006G145800 0.5kb downstream 0.5kb downstream 500 false Chr06: 25187119-25187618 Phaseolus vulgaris
Phvul.006G145800 1.0kb upstream 1.0kb upstream 7667 true Chr06: 25179452-25187118 Phaseolus vulgaris
Phvul.006G145800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 25179452-25180451 Phaseolus vulgaris
Phvul.006G145800 1.0kb downstream 1.0kb downstream 7667 true Chr06: 25180452-25188118 Phaseolus vulgaris
Phvul.006G145800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 25187119-25188118 Phaseolus vulgaris
Phvul.006G145800 2.0kb upstream 2.0kb upstream 8667 true Chr06: 25178452-25187118 Phaseolus vulgaris
Phvul.006G145800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 25178452-25180451 Phaseolus vulgaris
Phvul.006G145800 2.0kb downstream 2.0kb downstream 8667 true Chr06: 25180452-25189118 Phaseolus vulgaris
Phvul.006G145800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 25187119-25189118 Phaseolus vulgaris
Phvul.006G145800 5.0kb upstream 5.0kb upstream 11667 true Chr06: 25175452-25187118 Phaseolus vulgaris
Phvul.006G145800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 25175452-25180451 Phaseolus vulgaris
Phvul.006G145800 5.0kb downstream 5.0kb downstream 11667 true Chr06: 25180452-25192118 Phaseolus vulgaris
Phvul.006G145800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 25187119-25192118 Phaseolus vulgaris
Phvul.006G145800 10.0kb upstream 10.0kb upstream 16667 true Chr06: 25170452-25187118 Phaseolus vulgaris
Phvul.006G145800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 25170452-25180451 Phaseolus vulgaris
Phvul.006G145800 10.0kb downstream 10.0kb downstream 16667 true Chr06: 25180452-25197118 Phaseolus vulgaris
Phvul.006G145800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 25187119-25197118 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313225 5265 Fabidae View MSA
124072037 5270 Rosid View MSA
123750536 5271 Pentapetalae View MSA
122794934 5272 Eudicot View MSA
122051072 5273 Angiosperm View MSA
121351483 5274 Embryophyte View MSA
123428758 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7297 0.0 41.9216    
cufflinks 2.48157 0.0 11.2706    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 17.4393 0.0 59.1774    
cufflinks 23.5403 0.0 78.3584    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.19149 0.0 4.2878    
cufflinks 4.2295 0.0 18.2534    
cufflinks 0.583004 0.0 2.50808    
cufflinks 0.134094 0.0 0.551365 Low Low
cufflinks 35.8835 0.0 124.455 High High

0 Strain