Gene : Phvul.006G130800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11649:SF65 - PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 2 Genomic Order:  1304
Name:  ? Phvul.006G130800 Secondary Identifier:  ? PAC:37171838
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G130800 0.5kb upstream 0.5kb upstream 14055 true Chr06: 23910030-23924084 Phaseolus vulgaris
Phvul.006G130800 0.5kb upstream 0.5kb upstream 500 false Chr06: 23923585-23924084 Phaseolus vulgaris
Phvul.006G130800 0.5kb downstream 0.5kb downstream 14055 true Chr06: 23909530-23923584 Phaseolus vulgaris
Phvul.006G130800 0.5kb downstream 0.5kb downstream 500 false Chr06: 23909530-23910029 Phaseolus vulgaris
Phvul.006G130800 1.0kb upstream 1.0kb upstream 14555 true Chr06: 23910030-23924584 Phaseolus vulgaris
Phvul.006G130800 1.0kb upstream 1.0kb upstream 1000 false Chr06: 23923585-23924584 Phaseolus vulgaris
Phvul.006G130800 1.0kb downstream 1.0kb downstream 14555 true Chr06: 23909030-23923584 Phaseolus vulgaris
Phvul.006G130800 1.0kb downstream 1.0kb downstream 1000 false Chr06: 23909030-23910029 Phaseolus vulgaris
Phvul.006G130800 2.0kb upstream 2.0kb upstream 15555 true Chr06: 23910030-23925584 Phaseolus vulgaris
Phvul.006G130800 2.0kb upstream 2.0kb upstream 2000 false Chr06: 23923585-23925584 Phaseolus vulgaris
Phvul.006G130800 2.0kb downstream 2.0kb downstream 15555 true Chr06: 23908030-23923584 Phaseolus vulgaris
Phvul.006G130800 2.0kb downstream 2.0kb downstream 2000 false Chr06: 23908030-23910029 Phaseolus vulgaris
Phvul.006G130800 5.0kb upstream 5.0kb upstream 18555 true Chr06: 23910030-23928584 Phaseolus vulgaris
Phvul.006G130800 5.0kb upstream 5.0kb upstream 5000 false Chr06: 23923585-23928584 Phaseolus vulgaris
Phvul.006G130800 5.0kb downstream 5.0kb downstream 18555 true Chr06: 23905030-23923584 Phaseolus vulgaris
Phvul.006G130800 5.0kb downstream 5.0kb downstream 5000 false Chr06: 23905030-23910029 Phaseolus vulgaris
Phvul.006G130800 10.0kb upstream 10.0kb upstream 23555 true Chr06: 23910030-23933584 Phaseolus vulgaris
Phvul.006G130800 10.0kb upstream 10.0kb upstream 10000 false Chr06: 23923585-23933584 Phaseolus vulgaris
Phvul.006G130800 10.0kb downstream 10.0kb downstream 23555 true Chr06: 23900030-23923584 Phaseolus vulgaris
Phvul.006G130800 10.0kb downstream 10.0kb downstream 10000 false Chr06: 23900030-23910029 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306891 5265 Fabidae View MSA
124037158 5270 Rosid View MSA
123749417 5271 Pentapetalae View MSA
122789407 5272 Eudicot View MSA
122048345 5273 Angiosperm View MSA
121345089 5274 Embryophyte View MSA
123427050 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.6569 0.0 32.727   Low
cufflinks 18.2871 0.0 47.4043    
cufflinks 16.9416 0.0 43.8585    
cufflinks 12.5829 0.0 32.5654   Low
cufflinks 15.6618 0.0 40.4836    
cufflinks 17.8394 0.0 46.224    
cufflinks 20.0729 0.0 52.1762    
cufflinks 17.5279 0.0 45.4161    
cufflinks 17.892 0.0 46.3561    
cufflinks 30.9361 0.0 82.2245   High
cufflinks 14.2812 0.0 36.917    

0 Strain