Gene : Phvul.006G134011 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31807:SF6 - PROTEIN ENDOSPERM DEFECTIVE 1-RELATED Genomic Order:  1336
Name:  ? Phvul.006G134011 Secondary Identifier:  ? PAC:37171826
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G134011 0.5kb upstream 0.5kb upstream 4286 true Chr06: 24192900-24197185 Phaseolus vulgaris
Phvul.006G134011 0.5kb upstream 0.5kb upstream 500 false Chr06: 24196686-24197185 Phaseolus vulgaris
Phvul.006G134011 0.5kb downstream 0.5kb downstream 4286 true Chr06: 24192400-24196685 Phaseolus vulgaris
Phvul.006G134011 0.5kb downstream 0.5kb downstream 500 false Chr06: 24192400-24192899 Phaseolus vulgaris
Phvul.006G134011 1.0kb upstream 1.0kb upstream 4786 true Chr06: 24192900-24197685 Phaseolus vulgaris
Phvul.006G134011 1.0kb upstream 1.0kb upstream 1000 false Chr06: 24196686-24197685 Phaseolus vulgaris
Phvul.006G134011 1.0kb downstream 1.0kb downstream 4786 true Chr06: 24191900-24196685 Phaseolus vulgaris
Phvul.006G134011 1.0kb downstream 1.0kb downstream 1000 false Chr06: 24191900-24192899 Phaseolus vulgaris
Phvul.006G134011 2.0kb upstream 2.0kb upstream 5786 true Chr06: 24192900-24198685 Phaseolus vulgaris
Phvul.006G134011 2.0kb upstream 2.0kb upstream 2000 false Chr06: 24196686-24198685 Phaseolus vulgaris
Phvul.006G134011 2.0kb downstream 2.0kb downstream 5786 true Chr06: 24190900-24196685 Phaseolus vulgaris
Phvul.006G134011 2.0kb downstream 2.0kb downstream 2000 false Chr06: 24190900-24192899 Phaseolus vulgaris
Phvul.006G134011 5.0kb upstream 5.0kb upstream 8786 true Chr06: 24192900-24201685 Phaseolus vulgaris
Phvul.006G134011 5.0kb upstream 5.0kb upstream 5000 false Chr06: 24196686-24201685 Phaseolus vulgaris
Phvul.006G134011 5.0kb downstream 5.0kb downstream 8786 true Chr06: 24187900-24196685 Phaseolus vulgaris
Phvul.006G134011 5.0kb downstream 5.0kb downstream 5000 false Chr06: 24187900-24192899 Phaseolus vulgaris
Phvul.006G134011 10.0kb upstream 10.0kb upstream 13786 true Chr06: 24192900-24206685 Phaseolus vulgaris
Phvul.006G134011 10.0kb upstream 10.0kb upstream 10000 false Chr06: 24196686-24206685 Phaseolus vulgaris
Phvul.006G134011 10.0kb downstream 10.0kb downstream 13786 true Chr06: 24182900-24196685 Phaseolus vulgaris
Phvul.006G134011 10.0kb downstream 10.0kb downstream 10000 false Chr06: 24182900-24192899 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309438 5265 Fabidae View MSA
124067070 5270 Rosid View MSA
123752575 5271 Pentapetalae View MSA
122788375 5272 Eudicot View MSA
122044458 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.824574 0.0 2.84986    
cufflinks 2.46888 0.0 7.56628    
cufflinks 0.493313 0.0 1.7995 Low Low
cufflinks 0.40072 0.0 1.48927 Low Low
cufflinks 2.16427 0.0 6.738    
cufflinks 2.51272 0.0 7.69031    
cufflinks 2.22961 0.0 6.86617    
cufflinks 1.01652 0.0 3.42205    
cufflinks 2.79392 0.0 8.41109    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 2.06637 0.0 6.4669    

0 Strain