Gene : Phvul.009G030000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22904//PTHR22904:SF360 - TPR REPEAT CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  298
Name:  ? Phvul.009G030000 Secondary Identifier:  ? PAC:37151428
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G030000 0.5kb upstream 0.5kb upstream 4301 true Chr09: 6896081-6900381 Phaseolus vulgaris
Phvul.009G030000 0.5kb upstream 0.5kb upstream 500 false Chr09: 6899882-6900381 Phaseolus vulgaris
Phvul.009G030000 0.5kb downstream 0.5kb downstream 4301 true Chr09: 6895581-6899881 Phaseolus vulgaris
Phvul.009G030000 0.5kb downstream 0.5kb downstream 500 false Chr09: 6895581-6896080 Phaseolus vulgaris
Phvul.009G030000 1.0kb upstream 1.0kb upstream 4801 true Chr09: 6896081-6900881 Phaseolus vulgaris
Phvul.009G030000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 6899882-6900881 Phaseolus vulgaris
Phvul.009G030000 1.0kb downstream 1.0kb downstream 4801 true Chr09: 6895081-6899881 Phaseolus vulgaris
Phvul.009G030000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 6895081-6896080 Phaseolus vulgaris
Phvul.009G030000 2.0kb upstream 2.0kb upstream 5801 true Chr09: 6896081-6901881 Phaseolus vulgaris
Phvul.009G030000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 6899882-6901881 Phaseolus vulgaris
Phvul.009G030000 2.0kb downstream 2.0kb downstream 5801 true Chr09: 6894081-6899881 Phaseolus vulgaris
Phvul.009G030000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 6894081-6896080 Phaseolus vulgaris
Phvul.009G030000 5.0kb upstream 5.0kb upstream 8801 true Chr09: 6896081-6904881 Phaseolus vulgaris
Phvul.009G030000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 6899882-6904881 Phaseolus vulgaris
Phvul.009G030000 5.0kb downstream 5.0kb downstream 8801 true Chr09: 6891081-6899881 Phaseolus vulgaris
Phvul.009G030000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 6891081-6896080 Phaseolus vulgaris
Phvul.009G030000 10.0kb upstream 10.0kb upstream 13801 true Chr09: 6896081-6909881 Phaseolus vulgaris
Phvul.009G030000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 6899882-6909881 Phaseolus vulgaris
Phvul.009G030000 10.0kb downstream 10.0kb downstream 13801 true Chr09: 6886081-6899881 Phaseolus vulgaris
Phvul.009G030000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 6886081-6896080 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311538 5265 Fabidae View MSA
124069860 5270 Rosid View MSA
123742749 5271 Pentapetalae View MSA
122798057 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.02866 0.0 11.186    
cufflinks 2.61527 0.0 7.55332    
cufflinks 0.988101 0.0 3.18721   Low
cufflinks 2.8083 0.0 8.08965    
cufflinks 17.2204 0.0 44.5286    
cufflinks 1.23372 0.0 3.87773   Low
cufflinks 22.4378 0.0 58.6115   High
cufflinks 10.3491 0.0 26.8493    
cufflinks 20.4882 0.0 53.3342   High
cufflinks 13.2924 0.0 34.3791    
cufflinks 9.40378 0.0 24.5565    

0 Strain