Gene : Phvul.009G031900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10108:SF899 - PECTIN METHYLTRANSFERASE QUA2-RELATED Genomic Order:  318
Name:  ? Phvul.009G031900 Secondary Identifier:  ? PAC:37151124
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G031900 0.5kb upstream 0.5kb upstream 9040 true Chr09: 7250031-7259070 Phaseolus vulgaris
Phvul.009G031900 0.5kb upstream 0.5kb upstream 500 false Chr09: 7258571-7259070 Phaseolus vulgaris
Phvul.009G031900 0.5kb downstream 0.5kb downstream 9040 true Chr09: 7249531-7258570 Phaseolus vulgaris
Phvul.009G031900 0.5kb downstream 0.5kb downstream 500 false Chr09: 7249531-7250030 Phaseolus vulgaris
Phvul.009G031900 1.0kb upstream 1.0kb upstream 9540 true Chr09: 7250031-7259570 Phaseolus vulgaris
Phvul.009G031900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 7258571-7259570 Phaseolus vulgaris
Phvul.009G031900 1.0kb downstream 1.0kb downstream 9540 true Chr09: 7249031-7258570 Phaseolus vulgaris
Phvul.009G031900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 7249031-7250030 Phaseolus vulgaris
Phvul.009G031900 2.0kb upstream 2.0kb upstream 10540 true Chr09: 7250031-7260570 Phaseolus vulgaris
Phvul.009G031900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 7258571-7260570 Phaseolus vulgaris
Phvul.009G031900 2.0kb downstream 2.0kb downstream 10540 true Chr09: 7248031-7258570 Phaseolus vulgaris
Phvul.009G031900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 7248031-7250030 Phaseolus vulgaris
Phvul.009G031900 5.0kb upstream 5.0kb upstream 13540 true Chr09: 7250031-7263570 Phaseolus vulgaris
Phvul.009G031900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 7258571-7263570 Phaseolus vulgaris
Phvul.009G031900 5.0kb downstream 5.0kb downstream 13540 true Chr09: 7245031-7258570 Phaseolus vulgaris
Phvul.009G031900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 7245031-7250030 Phaseolus vulgaris
Phvul.009G031900 10.0kb upstream 10.0kb upstream 18540 true Chr09: 7250031-7268570 Phaseolus vulgaris
Phvul.009G031900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 7258571-7268570 Phaseolus vulgaris
Phvul.009G031900 10.0kb downstream 10.0kb downstream 18540 true Chr09: 7240031-7258570 Phaseolus vulgaris
Phvul.009G031900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 7240031-7250030 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309975 5265 Fabidae View MSA
124068394 5270 Rosid View MSA
123753010 5271 Pentapetalae View MSA
122796119 5272 Eudicot View MSA
122048389 5273 Angiosperm View MSA
121346192 5274 Embryophyte View MSA
123380346 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.04898 0.0 13.1716   Low
cufflinks 6.47338 0.0 20.1698    
cufflinks 8.14429 0.0 26.8844    
cufflinks 14.3628 0.0 48.0781   High
cufflinks 6.98584 0.0 24.0195    
cufflinks 8.22229 0.0 27.1555    
cufflinks 7.69489 0.0 25.6789    
cufflinks 8.56429 0.0 28.0114    
cufflinks 7.4131 0.0 24.9839    
cufflinks 8.55718 0.0 28.249    
cufflinks 6.89419 0.0 21.6336    

0 Strain