Gene : Phvul.009G032700 P. vulgaris v2.1
Defline:  (1 of 2) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  326
Name:  ? Phvul.009G032700 Secondary Identifier:  ? PAC:37150682
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G032700 0.5kb upstream 0.5kb upstream 5196 true Chr09: 7401974-7407169 Phaseolus vulgaris
Phvul.009G032700 0.5kb upstream 0.5kb upstream 500 false Chr09: 7401974-7402473 Phaseolus vulgaris
Phvul.009G032700 0.5kb downstream 0.5kb downstream 5196 true Chr09: 7402474-7407669 Phaseolus vulgaris
Phvul.009G032700 0.5kb downstream 0.5kb downstream 500 false Chr09: 7407170-7407669 Phaseolus vulgaris
Phvul.009G032700 1.0kb upstream 1.0kb upstream 5696 true Chr09: 7401474-7407169 Phaseolus vulgaris
Phvul.009G032700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 7401474-7402473 Phaseolus vulgaris
Phvul.009G032700 1.0kb downstream 1.0kb downstream 5696 true Chr09: 7402474-7408169 Phaseolus vulgaris
Phvul.009G032700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 7407170-7408169 Phaseolus vulgaris
Phvul.009G032700 2.0kb upstream 2.0kb upstream 6696 true Chr09: 7400474-7407169 Phaseolus vulgaris
Phvul.009G032700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 7400474-7402473 Phaseolus vulgaris
Phvul.009G032700 2.0kb downstream 2.0kb downstream 6696 true Chr09: 7402474-7409169 Phaseolus vulgaris
Phvul.009G032700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 7407170-7409169 Phaseolus vulgaris
Phvul.009G032700 5.0kb upstream 5.0kb upstream 9696 true Chr09: 7397474-7407169 Phaseolus vulgaris
Phvul.009G032700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 7397474-7402473 Phaseolus vulgaris
Phvul.009G032700 5.0kb downstream 5.0kb downstream 9696 true Chr09: 7402474-7412169 Phaseolus vulgaris
Phvul.009G032700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 7407170-7412169 Phaseolus vulgaris
Phvul.009G032700 10.0kb upstream 10.0kb upstream 14696 true Chr09: 7392474-7407169 Phaseolus vulgaris
Phvul.009G032700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 7392474-7402473 Phaseolus vulgaris
Phvul.009G032700 10.0kb downstream 10.0kb downstream 14696 true Chr09: 7402474-7417169 Phaseolus vulgaris
Phvul.009G032700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 7407170-7417169 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301777 5265 Fabidae View MSA
124074907 5270 Rosid View MSA
123738384 5271 Pentapetalae View MSA
122793450 5272 Eudicot View MSA
122045874 5273 Angiosperm View MSA
121344249 5274 Embryophyte View MSA
123424928 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.9149 0.0 19.1153    
cufflinks 9.15062 0.0 24.6916    
cufflinks 33.4647 0.0 86.9857   High
cufflinks 10.959 0.0 29.2789    
cufflinks 4.51894 0.0 13.0745    
cufflinks 14.8602 0.0 38.7988   High
cufflinks 1.75057 0.0 5.59732   Low
cufflinks 2.45151 0.0 7.53416    
cufflinks 1.54787 0.0 5.03075   Low
cufflinks 6.14531 0.0 17.2038    
cufflinks 3.62095 0.0 10.728    

0 Strain