Gene : Phvul.009G160700 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11062:SF81 - BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED Genomic Order:  1648
Name:  ? Phvul.009G160700 Secondary Identifier:  ? PAC:37151643
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5980 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G160700 0.5kb upstream 0.5kb upstream 5070 true Chr09: 23733135-23738204 Phaseolus vulgaris
Phvul.009G160700 0.5kb upstream 0.5kb upstream 500 false Chr09: 23737705-23738204 Phaseolus vulgaris
Phvul.009G160700 0.5kb downstream 0.5kb downstream 5070 true Chr09: 23732635-23737704 Phaseolus vulgaris
Phvul.009G160700 0.5kb downstream 0.5kb downstream 500 false Chr09: 23732635-23733134 Phaseolus vulgaris
Phvul.009G160700 1.0kb upstream 1.0kb upstream 5570 true Chr09: 23733135-23738704 Phaseolus vulgaris
Phvul.009G160700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 23737705-23738704 Phaseolus vulgaris
Phvul.009G160700 1.0kb downstream 1.0kb downstream 5570 true Chr09: 23732135-23737704 Phaseolus vulgaris
Phvul.009G160700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 23732135-23733134 Phaseolus vulgaris
Phvul.009G160700 2.0kb upstream 2.0kb upstream 6570 true Chr09: 23733135-23739704 Phaseolus vulgaris
Phvul.009G160700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 23737705-23739704 Phaseolus vulgaris
Phvul.009G160700 2.0kb downstream 2.0kb downstream 6570 true Chr09: 23731135-23737704 Phaseolus vulgaris
Phvul.009G160700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 23731135-23733134 Phaseolus vulgaris
Phvul.009G160700 5.0kb upstream 5.0kb upstream 9570 true Chr09: 23733135-23742704 Phaseolus vulgaris
Phvul.009G160700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 23737705-23742704 Phaseolus vulgaris
Phvul.009G160700 5.0kb downstream 5.0kb downstream 9570 true Chr09: 23728135-23737704 Phaseolus vulgaris
Phvul.009G160700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 23728135-23733134 Phaseolus vulgaris
Phvul.009G160700 10.0kb upstream 10.0kb upstream 14570 true Chr09: 23733135-23747704 Phaseolus vulgaris
Phvul.009G160700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 23737705-23747704 Phaseolus vulgaris
Phvul.009G160700 10.0kb downstream 10.0kb downstream 14570 true Chr09: 23723135-23737704 Phaseolus vulgaris
Phvul.009G160700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 23723135-23733134 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301284 5265 Fabidae View MSA
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.6773 0.0 50.8891    
cufflinks 9.52756 0.0 25.5119   Low
cufflinks 9.15274 0.0 24.5174   Low
cufflinks 12.1027 0.0 31.9551    
cufflinks 26.5179 0.0 68.5869    
cufflinks 9.10931 0.0 24.4537   Low
cufflinks 23.4909 0.0 60.7213    
cufflinks 12.1733 0.0 31.98    
cufflinks 23.6023 0.0 61.0074    
cufflinks 25.3092 0.0 65.4428    
cufflinks 36.7062 0.0 95.6494 High High

0 Strain