Gene : Phvul.009G147500 P. vulgaris v2.1
Defline:  (1 of 24) KOG4282 - Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain Genomic Order:  1520
Name:  ? Phvul.009G147500 Secondary Identifier:  ? PAC:37151923
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G147500 0.5kb upstream 0.5kb upstream 3529 true Chr09: 22052654-22056182 Phaseolus vulgaris
Phvul.009G147500 0.5kb upstream 0.5kb upstream 500 false Chr09: 22055683-22056182 Phaseolus vulgaris
Phvul.009G147500 0.5kb downstream 0.5kb downstream 3529 true Chr09: 22052154-22055682 Phaseolus vulgaris
Phvul.009G147500 0.5kb downstream 0.5kb downstream 500 false Chr09: 22052154-22052653 Phaseolus vulgaris
Phvul.009G147500 1.0kb upstream 1.0kb upstream 4029 true Chr09: 22052654-22056682 Phaseolus vulgaris
Phvul.009G147500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 22055683-22056682 Phaseolus vulgaris
Phvul.009G147500 1.0kb downstream 1.0kb downstream 4029 true Chr09: 22051654-22055682 Phaseolus vulgaris
Phvul.009G147500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 22051654-22052653 Phaseolus vulgaris
Phvul.009G147500 2.0kb upstream 2.0kb upstream 5029 true Chr09: 22052654-22057682 Phaseolus vulgaris
Phvul.009G147500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 22055683-22057682 Phaseolus vulgaris
Phvul.009G147500 2.0kb downstream 2.0kb downstream 5029 true Chr09: 22050654-22055682 Phaseolus vulgaris
Phvul.009G147500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 22050654-22052653 Phaseolus vulgaris
Phvul.009G147500 5.0kb upstream 5.0kb upstream 8029 true Chr09: 22052654-22060682 Phaseolus vulgaris
Phvul.009G147500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 22055683-22060682 Phaseolus vulgaris
Phvul.009G147500 5.0kb downstream 5.0kb downstream 8029 true Chr09: 22047654-22055682 Phaseolus vulgaris
Phvul.009G147500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 22047654-22052653 Phaseolus vulgaris
Phvul.009G147500 10.0kb upstream 10.0kb upstream 13029 true Chr09: 22052654-22065682 Phaseolus vulgaris
Phvul.009G147500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 22055683-22065682 Phaseolus vulgaris
Phvul.009G147500 10.0kb downstream 10.0kb downstream 13029 true Chr09: 22042654-22055682 Phaseolus vulgaris
Phvul.009G147500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 22042654-22052653 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307333 5265 Fabidae View MSA
124070678 5270 Rosid View MSA
123744900 5271 Pentapetalae View MSA
122796091 5272 Eudicot View MSA
122051331 5273 Angiosperm View MSA
121349901 5274 Embryophyte View MSA
123381491 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.8365 0.0 38.3845   High
cufflinks 9.15721 0.0 23.8068    
cufflinks 9.74769 0.0 25.286    
cufflinks 2.13085 0.0 6.26679   Low
cufflinks 7.46913 0.0 19.6447    
cufflinks 12.3823 0.0 32.0078   High
cufflinks 5.35231 0.0 14.2796    
cufflinks 3.63852 0.0 10.0309    
cufflinks 2.98423 0.0 8.37594    
cufflinks 2.2483 0.0 6.53675   Low
cufflinks 5.78687 0.0 15.435    

0 Strain