Gene : Phvul.009G147600 P. vulgaris v2.1
Defline:  (1 of 1) K01956 - carbamoyl-phosphate synthase small subunit (carA, CPA1) Genomic Order:  1521
Name:  ? Phvul.009G147600 Secondary Identifier:  ? PAC:37148603
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARGSYNBSUB-PWY Phaseolus vulgaris pathologic  
Pvulgaris ARGSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris CITRULBIO-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLUTAMINDEG-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY0-162 Phaseolus vulgaris pathologic  
Pvulgaris PWY-4984 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5686 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7211 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G147600 0.5kb upstream 0.5kb upstream 3404 true Chr09: 22071860-22075263 Phaseolus vulgaris
Phvul.009G147600 0.5kb upstream 0.5kb upstream 500 false Chr09: 22071860-22072359 Phaseolus vulgaris
Phvul.009G147600 0.5kb downstream 0.5kb downstream 3404 true Chr09: 22072360-22075763 Phaseolus vulgaris
Phvul.009G147600 0.5kb downstream 0.5kb downstream 500 false Chr09: 22075264-22075763 Phaseolus vulgaris
Phvul.009G147600 1.0kb upstream 1.0kb upstream 3904 true Chr09: 22071360-22075263 Phaseolus vulgaris
Phvul.009G147600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 22071360-22072359 Phaseolus vulgaris
Phvul.009G147600 1.0kb downstream 1.0kb downstream 3904 true Chr09: 22072360-22076263 Phaseolus vulgaris
Phvul.009G147600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 22075264-22076263 Phaseolus vulgaris
Phvul.009G147600 2.0kb upstream 2.0kb upstream 4904 true Chr09: 22070360-22075263 Phaseolus vulgaris
Phvul.009G147600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 22070360-22072359 Phaseolus vulgaris
Phvul.009G147600 2.0kb downstream 2.0kb downstream 4904 true Chr09: 22072360-22077263 Phaseolus vulgaris
Phvul.009G147600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 22075264-22077263 Phaseolus vulgaris
Phvul.009G147600 5.0kb upstream 5.0kb upstream 7904 true Chr09: 22067360-22075263 Phaseolus vulgaris
Phvul.009G147600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 22067360-22072359 Phaseolus vulgaris
Phvul.009G147600 5.0kb downstream 5.0kb downstream 7904 true Chr09: 22072360-22080263 Phaseolus vulgaris
Phvul.009G147600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 22075264-22080263 Phaseolus vulgaris
Phvul.009G147600 10.0kb upstream 10.0kb upstream 12904 true Chr09: 22062360-22075263 Phaseolus vulgaris
Phvul.009G147600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 22062360-22072359 Phaseolus vulgaris
Phvul.009G147600 10.0kb downstream 10.0kb downstream 12904 true Chr09: 22072360-22085263 Phaseolus vulgaris
Phvul.009G147600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 22075264-22085263 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313354 5265 Fabidae View MSA
124069141 5270 Rosid View MSA
123739104 5271 Pentapetalae View MSA
122788005 5272 Eudicot View MSA
122046797 5273 Angiosperm View MSA
121347244 5274 Embryophyte View MSA
123423822 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 60.748 0.0 181.325 High  
cufflinks 46.9609 0.0 165.451 High  
cufflinks 97.8266 0.0 396.427 High High
cufflinks 56.2881 0.0 203.473 High  
cufflinks 43.7808 0.0 151.843 High  
cufflinks 42.6443 0.0 120.309 High  
cufflinks 21.4147 0.0 60.2063   Low
cufflinks 19.3584 0.0 54.4642   Low
cufflinks 20.9508 0.0 58.8407   Low
cufflinks 46.0447 0.0 167.802 High  
cufflinks 36.6979 0.0 126.721 High  

0 Strain