Gene : Phvul.009G150600 P. vulgaris v2.1

Defline:  (1 of 1) PF11910 - Cyanobacterial and plant NDH-1 subunit O (NdhO) Genomic Order:  1548
Name:  ? Phvul.009G150600 Secondary Identifier:  ? PAC:37149226

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G150600 0.5kb upstream 0.5kb upstream 2100 true Chr09: 22406909-22409008 Phaseolus vulgaris
Phvul.009G150600 0.5kb upstream 0.5kb upstream 500 false Chr09: 22408509-22409008 Phaseolus vulgaris
Phvul.009G150600 0.5kb downstream 0.5kb downstream 2100 true Chr09: 22406409-22408508 Phaseolus vulgaris
Phvul.009G150600 0.5kb downstream 0.5kb downstream 500 false Chr09: 22406409-22406908 Phaseolus vulgaris
Phvul.009G150600 1.0kb upstream 1.0kb upstream 2600 true Chr09: 22406909-22409508 Phaseolus vulgaris
Phvul.009G150600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 22408509-22409508 Phaseolus vulgaris
Phvul.009G150600 1.0kb downstream 1.0kb downstream 2600 true Chr09: 22405909-22408508 Phaseolus vulgaris
Phvul.009G150600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 22405909-22406908 Phaseolus vulgaris
Phvul.009G150600 2.0kb upstream 2.0kb upstream 3600 true Chr09: 22406909-22410508 Phaseolus vulgaris
Phvul.009G150600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 22408509-22410508 Phaseolus vulgaris
Phvul.009G150600 2.0kb downstream 2.0kb downstream 3600 true Chr09: 22404909-22408508 Phaseolus vulgaris
Phvul.009G150600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 22404909-22406908 Phaseolus vulgaris
Phvul.009G150600 5.0kb upstream 5.0kb upstream 6600 true Chr09: 22406909-22413508 Phaseolus vulgaris
Phvul.009G150600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 22408509-22413508 Phaseolus vulgaris
Phvul.009G150600 5.0kb downstream 5.0kb downstream 6600 true Chr09: 22401909-22408508 Phaseolus vulgaris
Phvul.009G150600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 22401909-22406908 Phaseolus vulgaris
Phvul.009G150600 10.0kb upstream 10.0kb upstream 11600 true Chr09: 22406909-22418508 Phaseolus vulgaris
Phvul.009G150600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 22408509-22418508 Phaseolus vulgaris
Phvul.009G150600 10.0kb downstream 10.0kb downstream 11600 true Chr09: 22396909-22408508 Phaseolus vulgaris
Phvul.009G150600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 22396909-22406908 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303766 5265 Fabidae View MSA
124061930 5270 Rosid View MSA
123740594 5271 Pentapetalae View MSA
122785739 5272 Eudicot View MSA
122043742 5273 Angiosperm View MSA
121347549 5274 Embryophyte View MSA
123380569 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.02 0.0 24.3351    
cufflinks 14.9322 0.0 52.8844    
cufflinks 87.6605 0.0 295.988 High High
cufflinks 4.14126 0.0 20.5861    
cufflinks 4.36956 0.0 21.4819    
cufflinks 33.5028 0.0 105.295 High High
cufflinks 0.0607145 0.0 1.63609 Low Low
cufflinks 0.0449302 0.0 1.46004 Low Low
cufflinks 0.131781 0.0 2.5033 Low Low
cufflinks 6.85355 0.0 27.8372    
cufflinks 2.09872 0.0 13.3672    

0 Strain