Gene : Phvul.009G137000 P. vulgaris v2.1
Defline:  (1 of 4) PTHR31194//PTHR31194:SF16 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR // SUBFAMILY NOT NAMED Genomic Order:  1411
Name:  ? Phvul.009G137000 Secondary Identifier:  ? PAC:37149571
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G137000 0.5kb upstream 0.5kb upstream 2843 true Chr09: 20634907-20637749 Phaseolus vulgaris
Phvul.009G137000 0.5kb upstream 0.5kb upstream 500 false Chr09: 20634907-20635406 Phaseolus vulgaris
Phvul.009G137000 0.5kb downstream 0.5kb downstream 2843 true Chr09: 20635407-20638249 Phaseolus vulgaris
Phvul.009G137000 0.5kb downstream 0.5kb downstream 500 false Chr09: 20637750-20638249 Phaseolus vulgaris
Phvul.009G137000 1.0kb upstream 1.0kb upstream 3343 true Chr09: 20634407-20637749 Phaseolus vulgaris
Phvul.009G137000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 20634407-20635406 Phaseolus vulgaris
Phvul.009G137000 1.0kb downstream 1.0kb downstream 3343 true Chr09: 20635407-20638749 Phaseolus vulgaris
Phvul.009G137000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 20637750-20638749 Phaseolus vulgaris
Phvul.009G137000 2.0kb upstream 2.0kb upstream 4343 true Chr09: 20633407-20637749 Phaseolus vulgaris
Phvul.009G137000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 20633407-20635406 Phaseolus vulgaris
Phvul.009G137000 2.0kb downstream 2.0kb downstream 4343 true Chr09: 20635407-20639749 Phaseolus vulgaris
Phvul.009G137000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 20637750-20639749 Phaseolus vulgaris
Phvul.009G137000 5.0kb upstream 5.0kb upstream 7343 true Chr09: 20630407-20637749 Phaseolus vulgaris
Phvul.009G137000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 20630407-20635406 Phaseolus vulgaris
Phvul.009G137000 5.0kb downstream 5.0kb downstream 7343 true Chr09: 20635407-20642749 Phaseolus vulgaris
Phvul.009G137000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 20637750-20642749 Phaseolus vulgaris
Phvul.009G137000 10.0kb upstream 10.0kb upstream 12343 true Chr09: 20625407-20637749 Phaseolus vulgaris
Phvul.009G137000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 20625407-20635406 Phaseolus vulgaris
Phvul.009G137000 10.0kb downstream 10.0kb downstream 12343 true Chr09: 20635407-20647749 Phaseolus vulgaris
Phvul.009G137000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 20637750-20647749 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300059 5265 Fabidae View MSA
124071112 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.06295 0.0 3.53356   Low
cufflinks 2.76929 0.0 8.30122    
cufflinks 0.544131 0.0 1.95567 Low Low
cufflinks 2.71242 0.0 8.05151    
cufflinks 3.53546 0.0 10.2516    
cufflinks 1.33184 0.0 4.33739    
cufflinks 3.55412 0.0 10.2546    
cufflinks 3.16703 0.0 9.29969    
cufflinks 5.79034 0.0 15.9946   High
cufflinks 7.26474 0.0 19.7603   High
cufflinks 3.35667 0.0 9.79388    

0 Strain