Gene : Phvul.009G143500 P. vulgaris v2.1
Defline:  (1 of 1) PF12854//PF13041//PF13812 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1478
Name:  ? Phvul.009G143500 Secondary Identifier:  ? PAC:37151853
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G143500 0.5kb upstream 0.5kb upstream 3371 true Chr09: 21516877-21520247 Phaseolus vulgaris
Phvul.009G143500 0.5kb upstream 0.5kb upstream 500 false Chr09: 21516877-21517376 Phaseolus vulgaris
Phvul.009G143500 0.5kb downstream 0.5kb downstream 3371 true Chr09: 21517377-21520747 Phaseolus vulgaris
Phvul.009G143500 0.5kb downstream 0.5kb downstream 500 false Chr09: 21520248-21520747 Phaseolus vulgaris
Phvul.009G143500 1.0kb upstream 1.0kb upstream 3871 true Chr09: 21516377-21520247 Phaseolus vulgaris
Phvul.009G143500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 21516377-21517376 Phaseolus vulgaris
Phvul.009G143500 1.0kb downstream 1.0kb downstream 3871 true Chr09: 21517377-21521247 Phaseolus vulgaris
Phvul.009G143500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 21520248-21521247 Phaseolus vulgaris
Phvul.009G143500 2.0kb upstream 2.0kb upstream 4871 true Chr09: 21515377-21520247 Phaseolus vulgaris
Phvul.009G143500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 21515377-21517376 Phaseolus vulgaris
Phvul.009G143500 2.0kb downstream 2.0kb downstream 4871 true Chr09: 21517377-21522247 Phaseolus vulgaris
Phvul.009G143500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 21520248-21522247 Phaseolus vulgaris
Phvul.009G143500 5.0kb upstream 5.0kb upstream 7871 true Chr09: 21512377-21520247 Phaseolus vulgaris
Phvul.009G143500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 21512377-21517376 Phaseolus vulgaris
Phvul.009G143500 5.0kb downstream 5.0kb downstream 7871 true Chr09: 21517377-21525247 Phaseolus vulgaris
Phvul.009G143500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 21520248-21525247 Phaseolus vulgaris
Phvul.009G143500 10.0kb upstream 10.0kb upstream 12871 true Chr09: 21507377-21520247 Phaseolus vulgaris
Phvul.009G143500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 21507377-21517376 Phaseolus vulgaris
Phvul.009G143500 10.0kb downstream 10.0kb downstream 12871 true Chr09: 21517377-21530247 Phaseolus vulgaris
Phvul.009G143500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 21520248-21530247 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302450 5265 Fabidae View MSA
124068933 5270 Rosid View MSA
123750623 5271 Pentapetalae View MSA
122791820 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.65418 0.0 7.90213   Low
cufflinks 3.67138 0.0 10.5785    
cufflinks 4.97541 0.0 13.9136   High
cufflinks 4.46257 0.0 12.6799    
cufflinks 3.90177 0.0 11.2184    
cufflinks 4.53947 0.0 12.8057   High
cufflinks 2.98286 0.0 8.77783   Low
cufflinks 2.94134 0.0 8.64834   Low
cufflinks 3.06839 0.0 9.03709    
cufflinks 3.90445 0.0 11.1858    
cufflinks 4.02099 0.0 11.5176    

0 Strain