Gene : Phvul.009G129200 P. vulgaris v2.1
Defline:  (1 of 16) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1332
Name:  ? Phvul.009G129200 Secondary Identifier:  ? PAC:37151788
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G129200 0.5kb upstream 0.5kb upstream 3624 true Chr09: 19571998-19575621 Phaseolus vulgaris
Phvul.009G129200 0.5kb upstream 0.5kb upstream 500 false Chr09: 19575122-19575621 Phaseolus vulgaris
Phvul.009G129200 0.5kb downstream 0.5kb downstream 3624 true Chr09: 19571498-19575121 Phaseolus vulgaris
Phvul.009G129200 0.5kb downstream 0.5kb downstream 500 false Chr09: 19571498-19571997 Phaseolus vulgaris
Phvul.009G129200 1.0kb upstream 1.0kb upstream 4124 true Chr09: 19571998-19576121 Phaseolus vulgaris
Phvul.009G129200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 19575122-19576121 Phaseolus vulgaris
Phvul.009G129200 1.0kb downstream 1.0kb downstream 4124 true Chr09: 19570998-19575121 Phaseolus vulgaris
Phvul.009G129200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 19570998-19571997 Phaseolus vulgaris
Phvul.009G129200 2.0kb upstream 2.0kb upstream 5124 true Chr09: 19571998-19577121 Phaseolus vulgaris
Phvul.009G129200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 19575122-19577121 Phaseolus vulgaris
Phvul.009G129200 2.0kb downstream 2.0kb downstream 5124 true Chr09: 19569998-19575121 Phaseolus vulgaris
Phvul.009G129200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 19569998-19571997 Phaseolus vulgaris
Phvul.009G129200 5.0kb upstream 5.0kb upstream 8124 true Chr09: 19571998-19580121 Phaseolus vulgaris
Phvul.009G129200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 19575122-19580121 Phaseolus vulgaris
Phvul.009G129200 5.0kb downstream 5.0kb downstream 8124 true Chr09: 19566998-19575121 Phaseolus vulgaris
Phvul.009G129200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 19566998-19571997 Phaseolus vulgaris
Phvul.009G129200 10.0kb upstream 10.0kb upstream 13124 true Chr09: 19571998-19585121 Phaseolus vulgaris
Phvul.009G129200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 19575122-19585121 Phaseolus vulgaris
Phvul.009G129200 10.0kb downstream 10.0kb downstream 13124 true Chr09: 19561998-19575121 Phaseolus vulgaris
Phvul.009G129200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 19561998-19571997 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299627 5265 Fabidae View MSA
124066699 5270 Rosid View MSA
123739132 5271 Pentapetalae View MSA
122788969 5272 Eudicot View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.33957 0.0 5.85147   Low
cufflinks 2.13276 0.0 8.36901    
cufflinks 2.7179 0.0 9.85559   High
cufflinks 1.74523 0.0 7.4214    
cufflinks 1.9955 0.0 8.01417    
cufflinks 2.19705 0.0 8.75873    
cufflinks 1.96412 0.0 7.85769    
cufflinks 2.88927 0.0 10.4184   High
cufflinks 2.01863 0.0 8.20788    
cufflinks 3.16264 0.0 11.6258   High
cufflinks 1.67804 0.0 7.10574    

0 Strain