Gene : Phvul.009G133300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23023:SF121 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA11-RELATED Genomic Order:  1372
Name:  ? Phvul.009G133300 Secondary Identifier:  ? PAC:37152126
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWYDQC-4 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G133300 0.5kb upstream 0.5kb upstream 2364 true Chr09: 20160035-20162398 Phaseolus vulgaris
Phvul.009G133300 0.5kb upstream 0.5kb upstream 500 false Chr09: 20160035-20160534 Phaseolus vulgaris
Phvul.009G133300 0.5kb downstream 0.5kb downstream 2364 true Chr09: 20160535-20162898 Phaseolus vulgaris
Phvul.009G133300 0.5kb downstream 0.5kb downstream 500 false Chr09: 20162399-20162898 Phaseolus vulgaris
Phvul.009G133300 1.0kb upstream 1.0kb upstream 2864 true Chr09: 20159535-20162398 Phaseolus vulgaris
Phvul.009G133300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 20159535-20160534 Phaseolus vulgaris
Phvul.009G133300 1.0kb downstream 1.0kb downstream 2864 true Chr09: 20160535-20163398 Phaseolus vulgaris
Phvul.009G133300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 20162399-20163398 Phaseolus vulgaris
Phvul.009G133300 2.0kb upstream 2.0kb upstream 3864 true Chr09: 20158535-20162398 Phaseolus vulgaris
Phvul.009G133300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 20158535-20160534 Phaseolus vulgaris
Phvul.009G133300 2.0kb downstream 2.0kb downstream 3864 true Chr09: 20160535-20164398 Phaseolus vulgaris
Phvul.009G133300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 20162399-20164398 Phaseolus vulgaris
Phvul.009G133300 5.0kb upstream 5.0kb upstream 6864 true Chr09: 20155535-20162398 Phaseolus vulgaris
Phvul.009G133300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 20155535-20160534 Phaseolus vulgaris
Phvul.009G133300 5.0kb downstream 5.0kb downstream 6864 true Chr09: 20160535-20167398 Phaseolus vulgaris
Phvul.009G133300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 20162399-20167398 Phaseolus vulgaris
Phvul.009G133300 10.0kb upstream 10.0kb upstream 11864 true Chr09: 20150535-20162398 Phaseolus vulgaris
Phvul.009G133300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 20150535-20160534 Phaseolus vulgaris
Phvul.009G133300 10.0kb downstream 10.0kb downstream 11864 true Chr09: 20160535-20172398 Phaseolus vulgaris
Phvul.009G133300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 20162399-20172398 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301765 5265 Fabidae View MSA
124069751 5270 Rosid View MSA
123749752 5271 Pentapetalae View MSA
122794899 5272 Eudicot View MSA
122047342 5273 Angiosperm View MSA
121310731 5274 Embryophyte View MSA
123348144 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.3462 0.0 28.1668    
cufflinks 2.80346 0.0 8.77906    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.41284 0.0 10.5464    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0119806 0.0 0.0640829 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain