Gene : Phvul.009G118400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31742:SF1 - RPA-INTERACTING PROTEIN Genomic Order:  1220
Name:  ? Phvul.009G118400 Secondary Identifier:  ? PAC:37151320
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G118400 0.5kb upstream 0.5kb upstream 3100 true Chr09: 18145146-18148245 Phaseolus vulgaris
Phvul.009G118400 0.5kb upstream 0.5kb upstream 500 false Chr09: 18145146-18145645 Phaseolus vulgaris
Phvul.009G118400 0.5kb downstream 0.5kb downstream 3100 true Chr09: 18145646-18148745 Phaseolus vulgaris
Phvul.009G118400 0.5kb downstream 0.5kb downstream 500 false Chr09: 18148246-18148745 Phaseolus vulgaris
Phvul.009G118400 1.0kb upstream 1.0kb upstream 3600 true Chr09: 18144646-18148245 Phaseolus vulgaris
Phvul.009G118400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 18144646-18145645 Phaseolus vulgaris
Phvul.009G118400 1.0kb downstream 1.0kb downstream 3600 true Chr09: 18145646-18149245 Phaseolus vulgaris
Phvul.009G118400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 18148246-18149245 Phaseolus vulgaris
Phvul.009G118400 2.0kb upstream 2.0kb upstream 4600 true Chr09: 18143646-18148245 Phaseolus vulgaris
Phvul.009G118400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 18143646-18145645 Phaseolus vulgaris
Phvul.009G118400 2.0kb downstream 2.0kb downstream 4600 true Chr09: 18145646-18150245 Phaseolus vulgaris
Phvul.009G118400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 18148246-18150245 Phaseolus vulgaris
Phvul.009G118400 5.0kb upstream 5.0kb upstream 7600 true Chr09: 18140646-18148245 Phaseolus vulgaris
Phvul.009G118400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 18140646-18145645 Phaseolus vulgaris
Phvul.009G118400 5.0kb downstream 5.0kb downstream 7600 true Chr09: 18145646-18153245 Phaseolus vulgaris
Phvul.009G118400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 18148246-18153245 Phaseolus vulgaris
Phvul.009G118400 10.0kb upstream 10.0kb upstream 12600 true Chr09: 18135646-18148245 Phaseolus vulgaris
Phvul.009G118400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 18135646-18145645 Phaseolus vulgaris
Phvul.009G118400 10.0kb downstream 10.0kb downstream 12600 true Chr09: 18145646-18158245 Phaseolus vulgaris
Phvul.009G118400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 18148246-18158245 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299446 5265 Fabidae View MSA
124061489 5270 Rosid View MSA
123739858 5271 Pentapetalae View MSA
122789905 5272 Eudicot View MSA
122044802 5273 Angiosperm View MSA
121346952 5274 Embryophyte View MSA
123424751 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.81857 0.0 31.6295   High
cufflinks 5.53858 0.0 25.4998    
cufflinks 4.47569 0.0 20.6677    
cufflinks 5.83864 0.0 18.6199    
cufflinks 3.96267 0.0 18.5805   Low
cufflinks 3.55534 0.0 16.9972   Low
cufflinks 5.42759 0.0 23.2154    
cufflinks 4.75795 0.0 21.6895    
cufflinks 4.42175 0.0 14.471    
cufflinks 4.65721 0.0 15.2732    
cufflinks 6.4101 0.0 26.397   High

0 Strain