Gene : Phvul.009G117700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11229:SF5 - 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC Genomic Order:  1213
Name:  ? Phvul.009G117700 Secondary Identifier:  ? PAC:37150545
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G117700 0.5kb upstream 0.5kb upstream 1985 true Chr09: 18084463-18086447 Phaseolus vulgaris
Phvul.009G117700 0.5kb upstream 0.5kb upstream 500 false Chr09: 18085948-18086447 Phaseolus vulgaris
Phvul.009G117700 0.5kb downstream 0.5kb downstream 1985 true Chr09: 18083963-18085947 Phaseolus vulgaris
Phvul.009G117700 0.5kb downstream 0.5kb downstream 500 false Chr09: 18083963-18084462 Phaseolus vulgaris
Phvul.009G117700 1.0kb upstream 1.0kb upstream 2485 true Chr09: 18084463-18086947 Phaseolus vulgaris
Phvul.009G117700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 18085948-18086947 Phaseolus vulgaris
Phvul.009G117700 1.0kb downstream 1.0kb downstream 2485 true Chr09: 18083463-18085947 Phaseolus vulgaris
Phvul.009G117700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 18083463-18084462 Phaseolus vulgaris
Phvul.009G117700 2.0kb upstream 2.0kb upstream 3485 true Chr09: 18084463-18087947 Phaseolus vulgaris
Phvul.009G117700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 18085948-18087947 Phaseolus vulgaris
Phvul.009G117700 2.0kb downstream 2.0kb downstream 3485 true Chr09: 18082463-18085947 Phaseolus vulgaris
Phvul.009G117700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 18082463-18084462 Phaseolus vulgaris
Phvul.009G117700 5.0kb upstream 5.0kb upstream 6485 true Chr09: 18084463-18090947 Phaseolus vulgaris
Phvul.009G117700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 18085948-18090947 Phaseolus vulgaris
Phvul.009G117700 5.0kb downstream 5.0kb downstream 6485 true Chr09: 18079463-18085947 Phaseolus vulgaris
Phvul.009G117700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 18079463-18084462 Phaseolus vulgaris
Phvul.009G117700 10.0kb upstream 10.0kb upstream 11485 true Chr09: 18084463-18095947 Phaseolus vulgaris
Phvul.009G117700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 18085948-18095947 Phaseolus vulgaris
Phvul.009G117700 10.0kb downstream 10.0kb downstream 11485 true Chr09: 18074463-18085947 Phaseolus vulgaris
Phvul.009G117700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 18074463-18084462 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307169 5265 Fabidae View MSA
124065748 5270 Rosid View MSA
123738744 5271 Pentapetalae View MSA
122789869 5272 Eudicot View MSA
122045324 5273 Angiosperm View MSA
121345388 5274 Embryophyte View MSA
123425117 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 78.3816 0.0 208.15 High  
cufflinks 104.513 0.0 284.363 High  
cufflinks 329.344 0.0 1043.42 High High
cufflinks 82.843 0.0 220.249 High  
cufflinks 50.7676 0.0 131.755 High  
cufflinks 299.911 0.0 934.292 High High
cufflinks 8.85061 0.0 24.7025   Low
cufflinks 15.8349 0.0 42.1204    
cufflinks 11.2782 0.0 30.8635   Low
cufflinks 39.9602 0.0 103.32 High  
cufflinks 38.0993 0.0 98.4861 High  

0 Strain