Gene : Phvul.009G123100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22763:SF39 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Genomic Order:  1268
Name:  ? Phvul.009G123100 Secondary Identifier:  ? PAC:37151658
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G123100 0.5kb upstream 0.5kb upstream 3002 true Chr09: 18789216-18792217 Phaseolus vulgaris
Phvul.009G123100 0.5kb upstream 0.5kb upstream 500 false Chr09: 18789216-18789715 Phaseolus vulgaris
Phvul.009G123100 0.5kb downstream 0.5kb downstream 3002 true Chr09: 18789716-18792717 Phaseolus vulgaris
Phvul.009G123100 0.5kb downstream 0.5kb downstream 500 false Chr09: 18792218-18792717 Phaseolus vulgaris
Phvul.009G123100 1.0kb upstream 1.0kb upstream 3502 true Chr09: 18788716-18792217 Phaseolus vulgaris
Phvul.009G123100 1.0kb upstream 1.0kb upstream 1000 false Chr09: 18788716-18789715 Phaseolus vulgaris
Phvul.009G123100 1.0kb downstream 1.0kb downstream 3502 true Chr09: 18789716-18793217 Phaseolus vulgaris
Phvul.009G123100 1.0kb downstream 1.0kb downstream 1000 false Chr09: 18792218-18793217 Phaseolus vulgaris
Phvul.009G123100 2.0kb upstream 2.0kb upstream 4502 true Chr09: 18787716-18792217 Phaseolus vulgaris
Phvul.009G123100 2.0kb upstream 2.0kb upstream 2000 false Chr09: 18787716-18789715 Phaseolus vulgaris
Phvul.009G123100 2.0kb downstream 2.0kb downstream 4502 true Chr09: 18789716-18794217 Phaseolus vulgaris
Phvul.009G123100 2.0kb downstream 2.0kb downstream 2000 false Chr09: 18792218-18794217 Phaseolus vulgaris
Phvul.009G123100 5.0kb upstream 5.0kb upstream 7502 true Chr09: 18784716-18792217 Phaseolus vulgaris
Phvul.009G123100 5.0kb upstream 5.0kb upstream 5000 false Chr09: 18784716-18789715 Phaseolus vulgaris
Phvul.009G123100 5.0kb downstream 5.0kb downstream 7502 true Chr09: 18789716-18797217 Phaseolus vulgaris
Phvul.009G123100 5.0kb downstream 5.0kb downstream 5000 false Chr09: 18792218-18797217 Phaseolus vulgaris
Phvul.009G123100 10.0kb upstream 10.0kb upstream 12502 true Chr09: 18779716-18792217 Phaseolus vulgaris
Phvul.009G123100 10.0kb upstream 10.0kb upstream 10000 false Chr09: 18779716-18789715 Phaseolus vulgaris
Phvul.009G123100 10.0kb downstream 10.0kb downstream 12502 true Chr09: 18789716-18802217 Phaseolus vulgaris
Phvul.009G123100 10.0kb downstream 10.0kb downstream 10000 false Chr09: 18792218-18802217 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308402 5265 Fabidae View MSA
124063030 5270 Rosid View MSA
123746274 5271 Pentapetalae View MSA
122788935 5272 Eudicot View MSA
122048435 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.591779 0.0 2.67737    
cufflinks 1.44704 0.0 7.21667    
cufflinks 2.58923 0.0 11.7878    
cufflinks 3.26326 0.0 13.1072    
cufflinks 4.83198 0.0 17.2288    
cufflinks 1.30613 0.0 5.2026    
cufflinks 5.46386 0.0 19.04    
cufflinks 3.89835 0.0 15.1645    
cufflinks 7.72682 0.0 25.0414    
cufflinks 0.0466002 0.0 0.226453 Low Low
cufflinks 4.82493 0.0 17.355    

0 Strain