Gene : Phvul.009G123400 P. vulgaris v2.1
Defline:  (1 of 4) PTHR22811//PTHR22811:SF68 - TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1271
Name:  ? Phvul.009G123400 Secondary Identifier:  ? PAC:37151567
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G123400 0.5kb upstream 0.5kb upstream 2628 true Chr09: 18818959-18821586 Phaseolus vulgaris
Phvul.009G123400 0.5kb upstream 0.5kb upstream 500 false Chr09: 18818959-18819458 Phaseolus vulgaris
Phvul.009G123400 0.5kb downstream 0.5kb downstream 2628 true Chr09: 18819459-18822086 Phaseolus vulgaris
Phvul.009G123400 0.5kb downstream 0.5kb downstream 500 false Chr09: 18821587-18822086 Phaseolus vulgaris
Phvul.009G123400 1.0kb upstream 1.0kb upstream 3128 true Chr09: 18818459-18821586 Phaseolus vulgaris
Phvul.009G123400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 18818459-18819458 Phaseolus vulgaris
Phvul.009G123400 1.0kb downstream 1.0kb downstream 3128 true Chr09: 18819459-18822586 Phaseolus vulgaris
Phvul.009G123400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 18821587-18822586 Phaseolus vulgaris
Phvul.009G123400 2.0kb upstream 2.0kb upstream 4128 true Chr09: 18817459-18821586 Phaseolus vulgaris
Phvul.009G123400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 18817459-18819458 Phaseolus vulgaris
Phvul.009G123400 2.0kb downstream 2.0kb downstream 4128 true Chr09: 18819459-18823586 Phaseolus vulgaris
Phvul.009G123400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 18821587-18823586 Phaseolus vulgaris
Phvul.009G123400 5.0kb upstream 5.0kb upstream 7128 true Chr09: 18814459-18821586 Phaseolus vulgaris
Phvul.009G123400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 18814459-18819458 Phaseolus vulgaris
Phvul.009G123400 5.0kb downstream 5.0kb downstream 7128 true Chr09: 18819459-18826586 Phaseolus vulgaris
Phvul.009G123400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 18821587-18826586 Phaseolus vulgaris
Phvul.009G123400 10.0kb upstream 10.0kb upstream 12128 true Chr09: 18809459-18821586 Phaseolus vulgaris
Phvul.009G123400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 18809459-18819458 Phaseolus vulgaris
Phvul.009G123400 10.0kb downstream 10.0kb downstream 12128 true Chr09: 18819459-18831586 Phaseolus vulgaris
Phvul.009G123400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 18821587-18831586 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297897 5265 Fabidae View MSA
124065325 5270 Rosid View MSA
123743210 5271 Pentapetalae View MSA
122786619 5272 Eudicot View MSA
122045643 5273 Angiosperm View MSA
121349336 5274 Embryophyte View MSA
123428181 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.095 0.0 45.6156    
cufflinks 30.6525 0.0 79.4957   High
cufflinks 19.1412 0.0 50.6876    
cufflinks 37.0743 0.0 95.9338 High High
cufflinks 26.7841 0.0 69.7988    
cufflinks 15.3736 0.0 41.4421   Low
cufflinks 16.5991 0.0 44.3844    
cufflinks 18.6527 0.0 49.4063    
cufflinks 20.1865 0.0 53.3434    
cufflinks 19.4637 0.0 51.5982    
cufflinks 35.248 0.0 91.1967 High High

0 Strain