Gene : Phvul.006G217100 P. vulgaris v2.1
Defline:  (1 of 1) K14403 - cleavage and polyadenylation specificity factor subunit 3 (CPSF3, YSH1) Genomic Order:  2189
Name:  ? Phvul.006G217100 Secondary Identifier:  ? PAC:37174103
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G217100 0.5kb upstream 0.5kb upstream 3215 true Chr06: 30935485-30938699 Phaseolus vulgaris
Phvul.006G217100 0.5kb upstream 0.5kb upstream 500 false Chr06: 30935485-30935984 Phaseolus vulgaris
Phvul.006G217100 0.5kb downstream 0.5kb downstream 3215 true Chr06: 30935985-30939199 Phaseolus vulgaris
Phvul.006G217100 0.5kb downstream 0.5kb downstream 500 false Chr06: 30938700-30939199 Phaseolus vulgaris
Phvul.006G217100 1.0kb upstream 1.0kb upstream 3715 true Chr06: 30934985-30938699 Phaseolus vulgaris
Phvul.006G217100 1.0kb upstream 1.0kb upstream 1000 false Chr06: 30934985-30935984 Phaseolus vulgaris
Phvul.006G217100 1.0kb downstream 1.0kb downstream 3715 true Chr06: 30935985-30939699 Phaseolus vulgaris
Phvul.006G217100 1.0kb downstream 1.0kb downstream 1000 false Chr06: 30938700-30939699 Phaseolus vulgaris
Phvul.006G217100 2.0kb upstream 2.0kb upstream 4715 true Chr06: 30933985-30938699 Phaseolus vulgaris
Phvul.006G217100 2.0kb upstream 2.0kb upstream 2000 false Chr06: 30933985-30935984 Phaseolus vulgaris
Phvul.006G217100 2.0kb downstream 2.0kb downstream 4715 true Chr06: 30935985-30940699 Phaseolus vulgaris
Phvul.006G217100 2.0kb downstream 2.0kb downstream 2000 false Chr06: 30938700-30940699 Phaseolus vulgaris
Phvul.006G217100 5.0kb upstream 5.0kb upstream 7715 true Chr06: 30930985-30938699 Phaseolus vulgaris
Phvul.006G217100 5.0kb upstream 5.0kb upstream 5000 false Chr06: 30930985-30935984 Phaseolus vulgaris
Phvul.006G217100 5.0kb downstream 5.0kb downstream 7715 true Chr06: 30935985-30943699 Phaseolus vulgaris
Phvul.006G217100 5.0kb downstream 5.0kb downstream 5000 false Chr06: 30938700-30943699 Phaseolus vulgaris
Phvul.006G217100 10.0kb upstream 10.0kb upstream 12715 true Chr06: 30925985-30938699 Phaseolus vulgaris
Phvul.006G217100 10.0kb upstream 10.0kb upstream 10000 false Chr06: 30925985-30935984 Phaseolus vulgaris
Phvul.006G217100 10.0kb downstream 10.0kb downstream 12715 true Chr06: 30935985-30948699 Phaseolus vulgaris
Phvul.006G217100 10.0kb downstream 10.0kb downstream 10000 false Chr06: 30938700-30948699 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308944 5265 Fabidae View MSA
124069144 5270 Rosid View MSA
123737770 5271 Pentapetalae View MSA
122787624 5272 Eudicot View MSA
122043223 5273 Angiosperm View MSA
121344994 5274 Embryophyte View MSA
123426215 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.2409 0.0 36.9166   Low
cufflinks 25.5911 0.0 66.4814   High
cufflinks 17.3563 0.0 44.8667    
cufflinks 19.1565 0.0 49.5164    
cufflinks 17.6171 0.0 45.5442    
cufflinks 21.5234 0.0 55.6931    
cufflinks 18.0136 0.0 46.5617    
cufflinks 17.6472 0.0 45.6149    
cufflinks 18.9938 0.0 49.0984    
cufflinks 17.5993 0.0 45.494    
cufflinks 20.8288 0.0 53.8708    

0 Strain