Gene : Phvul.009G109800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12532:SF0 - TRANSCRIPTIONAL REGULATORY PROTEIN HAH1-RELATED Genomic Order:  1133
Name:  ? Phvul.009G109800 Secondary Identifier:  ? PAC:37150018
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G109800 0.5kb upstream 0.5kb upstream 5755 true Chr09: 17004838-17010592 Phaseolus vulgaris
Phvul.009G109800 0.5kb upstream 0.5kb upstream 500 false Chr09: 17010093-17010592 Phaseolus vulgaris
Phvul.009G109800 0.5kb downstream 0.5kb downstream 5755 true Chr09: 17004338-17010092 Phaseolus vulgaris
Phvul.009G109800 0.5kb downstream 0.5kb downstream 500 false Chr09: 17004338-17004837 Phaseolus vulgaris
Phvul.009G109800 1.0kb upstream 1.0kb upstream 6255 true Chr09: 17004838-17011092 Phaseolus vulgaris
Phvul.009G109800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 17010093-17011092 Phaseolus vulgaris
Phvul.009G109800 1.0kb downstream 1.0kb downstream 6255 true Chr09: 17003838-17010092 Phaseolus vulgaris
Phvul.009G109800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 17003838-17004837 Phaseolus vulgaris
Phvul.009G109800 2.0kb upstream 2.0kb upstream 7255 true Chr09: 17004838-17012092 Phaseolus vulgaris
Phvul.009G109800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 17010093-17012092 Phaseolus vulgaris
Phvul.009G109800 2.0kb downstream 2.0kb downstream 7255 true Chr09: 17002838-17010092 Phaseolus vulgaris
Phvul.009G109800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 17002838-17004837 Phaseolus vulgaris
Phvul.009G109800 5.0kb upstream 5.0kb upstream 10255 true Chr09: 17004838-17015092 Phaseolus vulgaris
Phvul.009G109800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 17010093-17015092 Phaseolus vulgaris
Phvul.009G109800 5.0kb downstream 5.0kb downstream 10255 true Chr09: 16999838-17010092 Phaseolus vulgaris
Phvul.009G109800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 16999838-17004837 Phaseolus vulgaris
Phvul.009G109800 10.0kb upstream 10.0kb upstream 15255 true Chr09: 17004838-17020092 Phaseolus vulgaris
Phvul.009G109800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 17010093-17020092 Phaseolus vulgaris
Phvul.009G109800 10.0kb downstream 10.0kb downstream 15255 true Chr09: 16994838-17010092 Phaseolus vulgaris
Phvul.009G109800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 16994838-17004837 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308716 5265 Fabidae View MSA
124060394 5270 Rosid View MSA
123737611 5271 Pentapetalae View MSA
122791742 5272 Eudicot View MSA
122042716 5273 Angiosperm View MSA
121345418 5274 Embryophyte View MSA
123424346 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.73563 0.0 25.7573    
cufflinks 7.10027 0.0 24.2004   High
cufflinks 2.93502 0.0 13.4149   Low
cufflinks 7.49577 0.0 26.0818   High
cufflinks 2.63353 0.0 9.27664   Low
cufflinks 3.43713 0.0 11.2063    
cufflinks 4.52701 0.0 14.1646    
cufflinks 6.70651 0.0 29.0254   High
cufflinks 4.641 0.0 14.4835    
cufflinks 3.40075 0.0 11.277    
cufflinks 3.41821 0.0 11.264    

0 Strain