Gene : Phvul.009G109700 P. vulgaris v2.1
Defline:  (1 of 1) 1.13.11.70 - All-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase / Carotenoid cleavage dioxygenase 8 Genomic Order:  1132
Name:  ? Phvul.009G109700 Secondary Identifier:  ? PAC:37149924
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7101 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G109700 0.5kb upstream 0.5kb upstream 3491 true Chr09: 17000788-17004278 Phaseolus vulgaris
Phvul.009G109700 0.5kb upstream 0.5kb upstream 500 false Chr09: 17000788-17001287 Phaseolus vulgaris
Phvul.009G109700 0.5kb downstream 0.5kb downstream 3491 true Chr09: 17001288-17004778 Phaseolus vulgaris
Phvul.009G109700 0.5kb downstream 0.5kb downstream 500 false Chr09: 17004279-17004778 Phaseolus vulgaris
Phvul.009G109700 1.0kb upstream 1.0kb upstream 3991 true Chr09: 17000288-17004278 Phaseolus vulgaris
Phvul.009G109700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 17000288-17001287 Phaseolus vulgaris
Phvul.009G109700 1.0kb downstream 1.0kb downstream 3991 true Chr09: 17001288-17005278 Phaseolus vulgaris
Phvul.009G109700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 17004279-17005278 Phaseolus vulgaris
Phvul.009G109700 2.0kb upstream 2.0kb upstream 4991 true Chr09: 16999288-17004278 Phaseolus vulgaris
Phvul.009G109700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 16999288-17001287 Phaseolus vulgaris
Phvul.009G109700 2.0kb downstream 2.0kb downstream 4991 true Chr09: 17001288-17006278 Phaseolus vulgaris
Phvul.009G109700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 17004279-17006278 Phaseolus vulgaris
Phvul.009G109700 5.0kb upstream 5.0kb upstream 7991 true Chr09: 16996288-17004278 Phaseolus vulgaris
Phvul.009G109700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 16996288-17001287 Phaseolus vulgaris
Phvul.009G109700 5.0kb downstream 5.0kb downstream 7991 true Chr09: 17001288-17009278 Phaseolus vulgaris
Phvul.009G109700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 17004279-17009278 Phaseolus vulgaris
Phvul.009G109700 10.0kb upstream 10.0kb upstream 12991 true Chr09: 16991288-17004278 Phaseolus vulgaris
Phvul.009G109700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 16991288-17001287 Phaseolus vulgaris
Phvul.009G109700 10.0kb downstream 10.0kb downstream 12991 true Chr09: 17001288-17014278 Phaseolus vulgaris
Phvul.009G109700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 17004279-17014278 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305580 5265 Fabidae View MSA
124065320 5270 Rosid View MSA
123738795 5271 Pentapetalae View MSA
122791259 5272 Eudicot View MSA
122048984 5273 Angiosperm View MSA
123428919 5275 Viridiplantae View MSA
121344649 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0607715 0.0 0.256064 Low Low
cufflinks 0.0112437 0.0 0.0561582 Low Low
cufflinks 0.283339 0.0 1.05772 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 7.07324 0.0 18.9394    
cufflinks 0.0460909 0.0 0.198879 Low Low
cufflinks 9.34155 0.0 24.4281    
cufflinks 4.1959 0.0 11.7129    
cufflinks 3.02718 0.0 8.67743    
cufflinks 2.45954 0.0 7.27038    
cufflinks 12.8922 0.0 33.4007   High

0 Strain