Gene : Phvul.006G219700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR24057:SF3 - SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED Genomic Order:  2215
Name:  ? Phvul.006G219700 Secondary Identifier:  ? PAC:37173169
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0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G219700 0.5kb upstream 0.5kb upstream 6157 true Chr06: 31088636-31094792 Phaseolus vulgaris
Phvul.006G219700 0.5kb upstream 0.5kb upstream 500 false Chr06: 31094293-31094792 Phaseolus vulgaris
Phvul.006G219700 0.5kb downstream 0.5kb downstream 6157 true Chr06: 31088136-31094292 Phaseolus vulgaris
Phvul.006G219700 0.5kb downstream 0.5kb downstream 500 false Chr06: 31088136-31088635 Phaseolus vulgaris
Phvul.006G219700 1.0kb upstream 1.0kb upstream 6657 true Chr06: 31088636-31095292 Phaseolus vulgaris
Phvul.006G219700 1.0kb upstream 1.0kb upstream 1000 false Chr06: 31094293-31095292 Phaseolus vulgaris
Phvul.006G219700 1.0kb downstream 1.0kb downstream 6657 true Chr06: 31087636-31094292 Phaseolus vulgaris
Phvul.006G219700 1.0kb downstream 1.0kb downstream 1000 false Chr06: 31087636-31088635 Phaseolus vulgaris
Phvul.006G219700 2.0kb upstream 2.0kb upstream 7657 true Chr06: 31088636-31096292 Phaseolus vulgaris
Phvul.006G219700 2.0kb upstream 2.0kb upstream 2000 false Chr06: 31094293-31096292 Phaseolus vulgaris
Phvul.006G219700 2.0kb downstream 2.0kb downstream 7657 true Chr06: 31086636-31094292 Phaseolus vulgaris
Phvul.006G219700 2.0kb downstream 2.0kb downstream 2000 false Chr06: 31086636-31088635 Phaseolus vulgaris
Phvul.006G219700 5.0kb upstream 5.0kb upstream 10657 true Chr06: 31088636-31099292 Phaseolus vulgaris
Phvul.006G219700 5.0kb upstream 5.0kb upstream 5000 false Chr06: 31094293-31099292 Phaseolus vulgaris
Phvul.006G219700 5.0kb downstream 5.0kb downstream 10657 true Chr06: 31083636-31094292 Phaseolus vulgaris
Phvul.006G219700 5.0kb downstream 5.0kb downstream 5000 false Chr06: 31083636-31088635 Phaseolus vulgaris
Phvul.006G219700 10.0kb upstream 10.0kb upstream 15657 true Chr06: 31088636-31104292 Phaseolus vulgaris
Phvul.006G219700 10.0kb upstream 10.0kb upstream 10000 false Chr06: 31094293-31104292 Phaseolus vulgaris
Phvul.006G219700 10.0kb downstream 10.0kb downstream 15657 true Chr06: 31078636-31094292 Phaseolus vulgaris
Phvul.006G219700 10.0kb downstream 10.0kb downstream 10000 false Chr06: 31078636-31088635 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303161 5265 Fabidae View MSA
124062280 5270 Rosid View MSA
123738232 5271 Pentapetalae View MSA
122769916 5272 Eudicot View MSA
122046195 5273 Angiosperm View MSA
121310573 5274 Embryophyte View MSA
123427870 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 61.5611 0.0 166.754 High High
cufflinks 40.9887 0.0 107.64 High  
cufflinks 36.0524 0.0 94.2112    
cufflinks 49.4706 0.0 131.189 High  
cufflinks 42.5898 0.0 111.848 High  
cufflinks 34.5402 0.0 90.0304 High  
cufflinks 23.0357 0.0 59.5432   Low
cufflinks 19.9676 0.0 51.632   Low
cufflinks 32.0238 0.0 83.1659 High  
cufflinks 38.7776 0.0 101.449 High  
cufflinks 45.6904 0.0 120.436 High  

0 Strain