Gene : Phvul.009G101200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22937//PTHR22937:SF53 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1044
Name:  ? Phvul.009G101200 Secondary Identifier:  ? PAC:37149603
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G101200 0.5kb upstream 0.5kb upstream 5249 true Chr09: 15918093-15923341 Phaseolus vulgaris
Phvul.009G101200 0.5kb upstream 0.5kb upstream 500 false Chr09: 15922842-15923341 Phaseolus vulgaris
Phvul.009G101200 0.5kb downstream 0.5kb downstream 5249 true Chr09: 15917593-15922841 Phaseolus vulgaris
Phvul.009G101200 0.5kb downstream 0.5kb downstream 500 false Chr09: 15917593-15918092 Phaseolus vulgaris
Phvul.009G101200 1.0kb upstream 1.0kb upstream 5749 true Chr09: 15918093-15923841 Phaseolus vulgaris
Phvul.009G101200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 15922842-15923841 Phaseolus vulgaris
Phvul.009G101200 1.0kb downstream 1.0kb downstream 5749 true Chr09: 15917093-15922841 Phaseolus vulgaris
Phvul.009G101200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 15917093-15918092 Phaseolus vulgaris
Phvul.009G101200 2.0kb upstream 2.0kb upstream 6749 true Chr09: 15918093-15924841 Phaseolus vulgaris
Phvul.009G101200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 15922842-15924841 Phaseolus vulgaris
Phvul.009G101200 2.0kb downstream 2.0kb downstream 6749 true Chr09: 15916093-15922841 Phaseolus vulgaris
Phvul.009G101200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 15916093-15918092 Phaseolus vulgaris
Phvul.009G101200 5.0kb upstream 5.0kb upstream 9749 true Chr09: 15918093-15927841 Phaseolus vulgaris
Phvul.009G101200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 15922842-15927841 Phaseolus vulgaris
Phvul.009G101200 5.0kb downstream 5.0kb downstream 9749 true Chr09: 15913093-15922841 Phaseolus vulgaris
Phvul.009G101200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 15913093-15918092 Phaseolus vulgaris
Phvul.009G101200 10.0kb upstream 10.0kb upstream 14749 true Chr09: 15918093-15932841 Phaseolus vulgaris
Phvul.009G101200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 15922842-15932841 Phaseolus vulgaris
Phvul.009G101200 10.0kb downstream 10.0kb downstream 14749 true Chr09: 15908093-15922841 Phaseolus vulgaris
Phvul.009G101200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 15908093-15918092 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310011 5265 Fabidae View MSA
124062589 5270 Rosid View MSA
123746879 5271 Pentapetalae View MSA
122795364 5272 Eudicot View MSA
122045356 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351500 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.9417 0.0 56.8955   High
cufflinks 6.7921 0.0 25.8405    
cufflinks 3.76218 0.0 16.0273   Low
cufflinks 7.15184 0.0 28.0785    
cufflinks 8.38841 0.0 34.364    
cufflinks 5.20175 0.0 20.8031    
cufflinks 10.9798 0.0 38.1071    
cufflinks 4.84195 0.0 22.6553   Low
cufflinks 12.172 0.0 46.0486    
cufflinks 17.5683 0.0 65.043   High
cufflinks 7.7109 0.0 28.4966    

0 Strain