Gene : Phvul.009G102000 P. vulgaris v2.1
Defline:  (1 of 1) K00306 - sarcosine oxidase / L-pipecolate oxidase (PIPOX) Genomic Order:  1052
Name:  ? Phvul.009G102000 Secondary Identifier:  ? PAC:37149371
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G102000 0.5kb upstream 0.5kb upstream 2224 true Chr09: 16011561-16013784 Phaseolus vulgaris
Phvul.009G102000 0.5kb upstream 0.5kb upstream 500 false Chr09: 16013285-16013784 Phaseolus vulgaris
Phvul.009G102000 0.5kb downstream 0.5kb downstream 2224 true Chr09: 16011061-16013284 Phaseolus vulgaris
Phvul.009G102000 0.5kb downstream 0.5kb downstream 500 false Chr09: 16011061-16011560 Phaseolus vulgaris
Phvul.009G102000 1.0kb upstream 1.0kb upstream 2724 true Chr09: 16011561-16014284 Phaseolus vulgaris
Phvul.009G102000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 16013285-16014284 Phaseolus vulgaris
Phvul.009G102000 1.0kb downstream 1.0kb downstream 2724 true Chr09: 16010561-16013284 Phaseolus vulgaris
Phvul.009G102000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 16010561-16011560 Phaseolus vulgaris
Phvul.009G102000 2.0kb upstream 2.0kb upstream 3724 true Chr09: 16011561-16015284 Phaseolus vulgaris
Phvul.009G102000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 16013285-16015284 Phaseolus vulgaris
Phvul.009G102000 2.0kb downstream 2.0kb downstream 3724 true Chr09: 16009561-16013284 Phaseolus vulgaris
Phvul.009G102000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 16009561-16011560 Phaseolus vulgaris
Phvul.009G102000 5.0kb upstream 5.0kb upstream 6724 true Chr09: 16011561-16018284 Phaseolus vulgaris
Phvul.009G102000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 16013285-16018284 Phaseolus vulgaris
Phvul.009G102000 5.0kb downstream 5.0kb downstream 6724 true Chr09: 16006561-16013284 Phaseolus vulgaris
Phvul.009G102000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 16006561-16011560 Phaseolus vulgaris
Phvul.009G102000 10.0kb upstream 10.0kb upstream 11724 true Chr09: 16011561-16023284 Phaseolus vulgaris
Phvul.009G102000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 16013285-16023284 Phaseolus vulgaris
Phvul.009G102000 10.0kb downstream 10.0kb downstream 11724 true Chr09: 16001561-16013284 Phaseolus vulgaris
Phvul.009G102000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 16001561-16011560 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301147 5265 Fabidae View MSA
124067197 5270 Rosid View MSA
123745961 5271 Pentapetalae View MSA
122793788 5272 Eudicot View MSA
122051106 5273 Angiosperm View MSA
121351535 5274 Embryophyte View MSA
123427900 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 126.67 0.0 382.826 High  
cufflinks 32.9334 0.0 86.3294 High  
cufflinks 48.276 0.0 129.352 High  
cufflinks 22.858 0.0 59.1659    
cufflinks 490.739 0.0 1983.23 High High
cufflinks 31.8026 0.0 83.2408    
cufflinks 16.0229 0.0 41.4224    
cufflinks 3.20662 0.0 9.25169   Low
cufflinks 156.027 0.0 492.279 High High
cufflinks 11.7816 0.0 30.7606    
cufflinks 10.4448 0.0 27.3703    

0 Strain