Gene : Phvul.009G104600 P. vulgaris v2.1
Defline:  (1 of 466) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1078
Name:  ? Phvul.009G104600 Secondary Identifier:  ? PAC:37151187
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G104600 0.5kb upstream 0.5kb upstream 2084 true Chr09: 16261258-16263341 Phaseolus vulgaris
Phvul.009G104600 0.5kb upstream 0.5kb upstream 500 false Chr09: 16262842-16263341 Phaseolus vulgaris
Phvul.009G104600 0.5kb downstream 0.5kb downstream 2084 true Chr09: 16260758-16262841 Phaseolus vulgaris
Phvul.009G104600 0.5kb downstream 0.5kb downstream 500 false Chr09: 16260758-16261257 Phaseolus vulgaris
Phvul.009G104600 1.0kb upstream 1.0kb upstream 2584 true Chr09: 16261258-16263841 Phaseolus vulgaris
Phvul.009G104600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 16262842-16263841 Phaseolus vulgaris
Phvul.009G104600 1.0kb downstream 1.0kb downstream 2584 true Chr09: 16260258-16262841 Phaseolus vulgaris
Phvul.009G104600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 16260258-16261257 Phaseolus vulgaris
Phvul.009G104600 2.0kb upstream 2.0kb upstream 3584 true Chr09: 16261258-16264841 Phaseolus vulgaris
Phvul.009G104600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 16262842-16264841 Phaseolus vulgaris
Phvul.009G104600 2.0kb downstream 2.0kb downstream 3584 true Chr09: 16259258-16262841 Phaseolus vulgaris
Phvul.009G104600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 16259258-16261257 Phaseolus vulgaris
Phvul.009G104600 5.0kb upstream 5.0kb upstream 6584 true Chr09: 16261258-16267841 Phaseolus vulgaris
Phvul.009G104600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 16262842-16267841 Phaseolus vulgaris
Phvul.009G104600 5.0kb downstream 5.0kb downstream 6584 true Chr09: 16256258-16262841 Phaseolus vulgaris
Phvul.009G104600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 16256258-16261257 Phaseolus vulgaris
Phvul.009G104600 10.0kb upstream 10.0kb upstream 11584 true Chr09: 16261258-16272841 Phaseolus vulgaris
Phvul.009G104600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 16262842-16272841 Phaseolus vulgaris
Phvul.009G104600 10.0kb downstream 10.0kb downstream 11584 true Chr09: 16251258-16262841 Phaseolus vulgaris
Phvul.009G104600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 16251258-16261257 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304445 5265 Fabidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.634534 0.0 2.2788    
cufflinks 1.0653 0.0 3.62429    
cufflinks 0.227423 0.0 0.89189 Low Low
cufflinks 0.880264 0.0 3.07811    
cufflinks 0.74607 0.0 2.64785    
cufflinks 0.496123 0.0 1.82396 Low  
cufflinks 0.504668 0.0 1.85042 Low  
cufflinks 1.86892 0.0 5.9677   High
cufflinks 0.483626 0.0 1.78134 Low  
cufflinks 1.10073 0.0 3.73505    
cufflinks 0.602674 0.0 2.17806    

0 Strain