Gene : Phvul.009G095900 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11624:SF64 - 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN Genomic Order:  991
Name:  ? Phvul.009G095900 Secondary Identifier:  ? PAC:37148741
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7560 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G095900 0.5kb upstream 0.5kb upstream 7071 true Chr09: 15217786-15224856 Phaseolus vulgaris
Phvul.009G095900 0.5kb upstream 0.5kb upstream 500 false Chr09: 15224357-15224856 Phaseolus vulgaris
Phvul.009G095900 0.5kb downstream 0.5kb downstream 7071 true Chr09: 15217286-15224356 Phaseolus vulgaris
Phvul.009G095900 0.5kb downstream 0.5kb downstream 500 false Chr09: 15217286-15217785 Phaseolus vulgaris
Phvul.009G095900 1.0kb upstream 1.0kb upstream 7571 true Chr09: 15217786-15225356 Phaseolus vulgaris
Phvul.009G095900 1.0kb upstream 1.0kb upstream 1000 false Chr09: 15224357-15225356 Phaseolus vulgaris
Phvul.009G095900 1.0kb downstream 1.0kb downstream 7571 true Chr09: 15216786-15224356 Phaseolus vulgaris
Phvul.009G095900 1.0kb downstream 1.0kb downstream 1000 false Chr09: 15216786-15217785 Phaseolus vulgaris
Phvul.009G095900 2.0kb upstream 2.0kb upstream 8571 true Chr09: 15217786-15226356 Phaseolus vulgaris
Phvul.009G095900 2.0kb upstream 2.0kb upstream 2000 false Chr09: 15224357-15226356 Phaseolus vulgaris
Phvul.009G095900 2.0kb downstream 2.0kb downstream 8571 true Chr09: 15215786-15224356 Phaseolus vulgaris
Phvul.009G095900 2.0kb downstream 2.0kb downstream 2000 false Chr09: 15215786-15217785 Phaseolus vulgaris
Phvul.009G095900 5.0kb upstream 5.0kb upstream 11571 true Chr09: 15217786-15229356 Phaseolus vulgaris
Phvul.009G095900 5.0kb upstream 5.0kb upstream 5000 false Chr09: 15224357-15229356 Phaseolus vulgaris
Phvul.009G095900 5.0kb downstream 5.0kb downstream 11571 true Chr09: 15212786-15224356 Phaseolus vulgaris
Phvul.009G095900 5.0kb downstream 5.0kb downstream 5000 false Chr09: 15212786-15217785 Phaseolus vulgaris
Phvul.009G095900 10.0kb upstream 10.0kb upstream 16571 true Chr09: 15217786-15234356 Phaseolus vulgaris
Phvul.009G095900 10.0kb upstream 10.0kb upstream 10000 false Chr09: 15224357-15234356 Phaseolus vulgaris
Phvul.009G095900 10.0kb downstream 10.0kb downstream 16571 true Chr09: 15207786-15224356 Phaseolus vulgaris
Phvul.009G095900 10.0kb downstream 10.0kb downstream 10000 false Chr09: 15207786-15217785 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308713 5265 Fabidae View MSA
124066019 5270 Rosid View MSA
123737503 5271 Pentapetalae View MSA
122791788 5272 Eudicot View MSA
122044949 5273 Angiosperm View MSA
121310367 5274 Embryophyte View MSA
123347869 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.15063 0.0 16.6191    
cufflinks 9.22915 0.0 24.2613    
cufflinks 4.20407 0.0 11.7461    
cufflinks 8.26033 0.0 21.9862    
cufflinks 10.3781 0.0 27.1623    
cufflinks 2.83976 0.0 8.25898   Low
cufflinks 5.97349 0.0 16.209    
cufflinks 1.96636 0.0 5.94922   Low
cufflinks 9.16481 0.0 24.1395    
cufflinks 18.9275 0.0 48.9497   High
cufflinks 9.47645 0.0 24.9299    

0 Strain