Gene : Phvul.009G098000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31407:SF7 - PSBP DOMAIN-CONTAINING PROTEIN 5, CHLOROPLASTIC Genomic Order:  1012
Name:  ? Phvul.009G098000 Secondary Identifier:  ? PAC:37151595
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PHOTOALL-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-101 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G098000 0.5kb upstream 0.5kb upstream 4292 true Chr09: 15463729-15468020 Phaseolus vulgaris
Phvul.009G098000 0.5kb upstream 0.5kb upstream 500 false Chr09: 15463729-15464228 Phaseolus vulgaris
Phvul.009G098000 0.5kb downstream 0.5kb downstream 4292 true Chr09: 15464229-15468520 Phaseolus vulgaris
Phvul.009G098000 0.5kb downstream 0.5kb downstream 500 false Chr09: 15468021-15468520 Phaseolus vulgaris
Phvul.009G098000 1.0kb upstream 1.0kb upstream 4792 true Chr09: 15463229-15468020 Phaseolus vulgaris
Phvul.009G098000 1.0kb upstream 1.0kb upstream 1000 false Chr09: 15463229-15464228 Phaseolus vulgaris
Phvul.009G098000 1.0kb downstream 1.0kb downstream 4792 true Chr09: 15464229-15469020 Phaseolus vulgaris
Phvul.009G098000 1.0kb downstream 1.0kb downstream 1000 false Chr09: 15468021-15469020 Phaseolus vulgaris
Phvul.009G098000 2.0kb upstream 2.0kb upstream 5792 true Chr09: 15462229-15468020 Phaseolus vulgaris
Phvul.009G098000 2.0kb upstream 2.0kb upstream 2000 false Chr09: 15462229-15464228 Phaseolus vulgaris
Phvul.009G098000 2.0kb downstream 2.0kb downstream 5792 true Chr09: 15464229-15470020 Phaseolus vulgaris
Phvul.009G098000 2.0kb downstream 2.0kb downstream 2000 false Chr09: 15468021-15470020 Phaseolus vulgaris
Phvul.009G098000 5.0kb upstream 5.0kb upstream 8792 true Chr09: 15459229-15468020 Phaseolus vulgaris
Phvul.009G098000 5.0kb upstream 5.0kb upstream 5000 false Chr09: 15459229-15464228 Phaseolus vulgaris
Phvul.009G098000 5.0kb downstream 5.0kb downstream 8792 true Chr09: 15464229-15473020 Phaseolus vulgaris
Phvul.009G098000 5.0kb downstream 5.0kb downstream 5000 false Chr09: 15468021-15473020 Phaseolus vulgaris
Phvul.009G098000 10.0kb upstream 10.0kb upstream 13792 true Chr09: 15454229-15468020 Phaseolus vulgaris
Phvul.009G098000 10.0kb upstream 10.0kb upstream 10000 false Chr09: 15454229-15464228 Phaseolus vulgaris
Phvul.009G098000 10.0kb downstream 10.0kb downstream 13792 true Chr09: 15464229-15478020 Phaseolus vulgaris
Phvul.009G098000 10.0kb downstream 10.0kb downstream 10000 false Chr09: 15468021-15478020 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302325 5265 Fabidae View MSA
124062486 5270 Rosid View MSA
123736940 5271 Pentapetalae View MSA
122792817 5272 Eudicot View MSA
122045870 5273 Angiosperm View MSA
121347202 5274 Embryophyte View MSA
123425599 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.46028 0.0 27.0724    
cufflinks 17.7455 0.0 48.1719    
cufflinks 66.4307 0.0 172.444 High High
cufflinks 22.9637 0.0 61.0833    
cufflinks 11.173 0.0 31.6339    
cufflinks 59.2657 0.0 153.38 High High
cufflinks 3.17823 0.0 10.3258   Low
cufflinks 6.1484 0.0 18.4552    
cufflinks 2.41474 0.0 8.12409   Low
cufflinks 7.48703 0.0 22.093    
cufflinks 7.28552 0.0 21.6355    

0 Strain