Gene : Phvul.006G206400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23335:SF12 - CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1-RELATED Genomic Order:  2078
Name:  ? Phvul.006G206400 Secondary Identifier:  ? PAC:37172833
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.006G206400 0.5kb upstream 0.5kb upstream 11508 true Chr06: 30115355-30126862 Phaseolus vulgaris
Phvul.006G206400 0.5kb upstream 0.5kb upstream 500 false Chr06: 30126363-30126862 Phaseolus vulgaris
Phvul.006G206400 0.5kb downstream 0.5kb downstream 11508 true Chr06: 30114855-30126362 Phaseolus vulgaris
Phvul.006G206400 0.5kb downstream 0.5kb downstream 500 false Chr06: 30114855-30115354 Phaseolus vulgaris
Phvul.006G206400 1.0kb upstream 1.0kb upstream 12008 true Chr06: 30115355-30127362 Phaseolus vulgaris
Phvul.006G206400 1.0kb upstream 1.0kb upstream 1000 false Chr06: 30126363-30127362 Phaseolus vulgaris
Phvul.006G206400 1.0kb downstream 1.0kb downstream 12008 true Chr06: 30114355-30126362 Phaseolus vulgaris
Phvul.006G206400 1.0kb downstream 1.0kb downstream 1000 false Chr06: 30114355-30115354 Phaseolus vulgaris
Phvul.006G206400 2.0kb upstream 2.0kb upstream 13008 true Chr06: 30115355-30128362 Phaseolus vulgaris
Phvul.006G206400 2.0kb upstream 2.0kb upstream 2000 false Chr06: 30126363-30128362 Phaseolus vulgaris
Phvul.006G206400 2.0kb downstream 2.0kb downstream 13008 true Chr06: 30113355-30126362 Phaseolus vulgaris
Phvul.006G206400 2.0kb downstream 2.0kb downstream 2000 false Chr06: 30113355-30115354 Phaseolus vulgaris
Phvul.006G206400 5.0kb upstream 5.0kb upstream 16008 true Chr06: 30115355-30131362 Phaseolus vulgaris
Phvul.006G206400 5.0kb upstream 5.0kb upstream 5000 false Chr06: 30126363-30131362 Phaseolus vulgaris
Phvul.006G206400 5.0kb downstream 5.0kb downstream 16008 true Chr06: 30110355-30126362 Phaseolus vulgaris
Phvul.006G206400 5.0kb downstream 5.0kb downstream 5000 false Chr06: 30110355-30115354 Phaseolus vulgaris
Phvul.006G206400 10.0kb upstream 10.0kb upstream 21008 true Chr06: 30115355-30136362 Phaseolus vulgaris
Phvul.006G206400 10.0kb upstream 10.0kb upstream 10000 false Chr06: 30126363-30136362 Phaseolus vulgaris
Phvul.006G206400 10.0kb downstream 10.0kb downstream 21008 true Chr06: 30105355-30126362 Phaseolus vulgaris
Phvul.006G206400 10.0kb downstream 10.0kb downstream 10000 false Chr06: 30105355-30115354 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310987 5265 Fabidae View MSA
124071259 5270 Rosid View MSA
123742819 5271 Pentapetalae View MSA
122795418 5272 Eudicot View MSA
122048924 5273 Angiosperm View MSA
121350175 5274 Embryophyte View MSA
123427695 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.49664 0.0 14.5454   Low
cufflinks 9.50019 0.0 24.5891    
cufflinks 9.93535 0.0 25.6939    
cufflinks 3.47874 0.0 9.62359   Low
cufflinks 7.5994 0.0 19.8504    
cufflinks 11.1231 0.0 28.7512    
cufflinks 13.5472 0.0 35.0769    
cufflinks 11.8962 0.0 30.7672    
cufflinks 10.9328 0.0 28.2616    
cufflinks 15.8336 0.0 41.1267   High
cufflinks 7.78091 0.0 20.2758    

0 Strain