Gene : Phvul.009G100400 P. vulgaris v2.1
Defline:  (1 of 3) PTHR32382:SF15 - FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3-RELATED Genomic Order:  1036
Name:  ? Phvul.009G100400 Secondary Identifier:  ? PAC:37148538
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G100400 0.5kb upstream 0.5kb upstream 1193 true Chr09: 15834743-15835935 Phaseolus vulgaris
Phvul.009G100400 0.5kb upstream 0.5kb upstream 500 false Chr09: 15835436-15835935 Phaseolus vulgaris
Phvul.009G100400 0.5kb downstream 0.5kb downstream 1193 true Chr09: 15834243-15835435 Phaseolus vulgaris
Phvul.009G100400 0.5kb downstream 0.5kb downstream 500 false Chr09: 15834243-15834742 Phaseolus vulgaris
Phvul.009G100400 1.0kb upstream 1.0kb upstream 1693 true Chr09: 15834743-15836435 Phaseolus vulgaris
Phvul.009G100400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 15835436-15836435 Phaseolus vulgaris
Phvul.009G100400 1.0kb downstream 1.0kb downstream 1693 true Chr09: 15833743-15835435 Phaseolus vulgaris
Phvul.009G100400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 15833743-15834742 Phaseolus vulgaris
Phvul.009G100400 2.0kb upstream 2.0kb upstream 2693 true Chr09: 15834743-15837435 Phaseolus vulgaris
Phvul.009G100400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 15835436-15837435 Phaseolus vulgaris
Phvul.009G100400 2.0kb downstream 2.0kb downstream 2693 true Chr09: 15832743-15835435 Phaseolus vulgaris
Phvul.009G100400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 15832743-15834742 Phaseolus vulgaris
Phvul.009G100400 5.0kb upstream 5.0kb upstream 5693 true Chr09: 15834743-15840435 Phaseolus vulgaris
Phvul.009G100400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 15835436-15840435 Phaseolus vulgaris
Phvul.009G100400 5.0kb downstream 5.0kb downstream 5693 true Chr09: 15829743-15835435 Phaseolus vulgaris
Phvul.009G100400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 15829743-15834742 Phaseolus vulgaris
Phvul.009G100400 10.0kb upstream 10.0kb upstream 10693 true Chr09: 15834743-15845435 Phaseolus vulgaris
Phvul.009G100400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 15835436-15845435 Phaseolus vulgaris
Phvul.009G100400 10.0kb downstream 10.0kb downstream 10693 true Chr09: 15824743-15835435 Phaseolus vulgaris
Phvul.009G100400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 15824743-15834742 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254295 5265 Fabidae View MSA
123996521 5270 Rosid View MSA
123749188 5271 Pentapetalae View MSA
122790622 5272 Eudicot View MSA
122051628 5273 Angiosperm View MSA
121351509 5274 Embryophyte View MSA
123426561 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.4642 0.0 149.835 High High
cufflinks 0.00884709 0.0 0.0616192 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 49.8569 0.0 130.217 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0999143 0.0 0.47626 Low  
cufflinks 0.0263892 0.0 0.145049 Low  
cufflinks 0.233164 0.0 1.01738 Low  
cufflinks 0.0388187 0.0 0.204331 Low  

0 Strain