Gene : Phvul.009G224400 P. vulgaris v2.1
Defline:  (1 of 2) K02703 - photosystem II P680 reaction center D1 protein (psbA) Genomic Order:  2295
Name:  ? Phvul.009G224400 Secondary Identifier:  ? PAC:37151384
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PHOTOALL-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-101 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G224400 0.5kb upstream 0.5kb upstream 1794 true Chr09: 33802817-33804610 Phaseolus vulgaris
Phvul.009G224400 0.5kb upstream 0.5kb upstream 500 false Chr09: 33802817-33803316 Phaseolus vulgaris
Phvul.009G224400 0.5kb downstream 0.5kb downstream 1794 true Chr09: 33803317-33805110 Phaseolus vulgaris
Phvul.009G224400 0.5kb downstream 0.5kb downstream 500 false Chr09: 33804611-33805110 Phaseolus vulgaris
Phvul.009G224400 1.0kb upstream 1.0kb upstream 2294 true Chr09: 33802317-33804610 Phaseolus vulgaris
Phvul.009G224400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 33802317-33803316 Phaseolus vulgaris
Phvul.009G224400 1.0kb downstream 1.0kb downstream 2294 true Chr09: 33803317-33805610 Phaseolus vulgaris
Phvul.009G224400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 33804611-33805610 Phaseolus vulgaris
Phvul.009G224400 2.0kb upstream 2.0kb upstream 3294 true Chr09: 33801317-33804610 Phaseolus vulgaris
Phvul.009G224400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 33801317-33803316 Phaseolus vulgaris
Phvul.009G224400 2.0kb downstream 2.0kb downstream 3294 true Chr09: 33803317-33806610 Phaseolus vulgaris
Phvul.009G224400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 33804611-33806610 Phaseolus vulgaris
Phvul.009G224400 5.0kb upstream 5.0kb upstream 6294 true Chr09: 33798317-33804610 Phaseolus vulgaris
Phvul.009G224400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 33798317-33803316 Phaseolus vulgaris
Phvul.009G224400 5.0kb downstream 5.0kb downstream 6294 true Chr09: 33803317-33809610 Phaseolus vulgaris
Phvul.009G224400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 33804611-33809610 Phaseolus vulgaris
Phvul.009G224400 10.0kb upstream 10.0kb upstream 11294 true Chr09: 33793317-33804610 Phaseolus vulgaris
Phvul.009G224400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 33793317-33803316 Phaseolus vulgaris
Phvul.009G224400 10.0kb downstream 10.0kb downstream 11294 true Chr09: 33803317-33814610 Phaseolus vulgaris
Phvul.009G224400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 33804611-33814610 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122252701 5265 Fabidae Singleton cluster - no MSA
123995411 5270 Rosid Singleton cluster - no MSA
123753442 5271 Pentapetalae View MSA
122794783 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain