Gene : Phvul.009G226400 P. vulgaris v2.1
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  2313
Name:  ? Phvul.009G226400 Secondary Identifier:  ? PAC:37148776
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-4361 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7270 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7528 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G226400 0.5kb upstream 0.5kb upstream 3744 true Chr09: 34076901-34080644 Phaseolus vulgaris
Phvul.009G226400 0.5kb upstream 0.5kb upstream 500 false Chr09: 34076901-34077400 Phaseolus vulgaris
Phvul.009G226400 0.5kb downstream 0.5kb downstream 3744 true Chr09: 34077401-34081144 Phaseolus vulgaris
Phvul.009G226400 0.5kb downstream 0.5kb downstream 500 false Chr09: 34080645-34081144 Phaseolus vulgaris
Phvul.009G226400 1.0kb upstream 1.0kb upstream 4244 true Chr09: 34076401-34080644 Phaseolus vulgaris
Phvul.009G226400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 34076401-34077400 Phaseolus vulgaris
Phvul.009G226400 1.0kb downstream 1.0kb downstream 4244 true Chr09: 34077401-34081644 Phaseolus vulgaris
Phvul.009G226400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 34080645-34081644 Phaseolus vulgaris
Phvul.009G226400 2.0kb upstream 2.0kb upstream 5244 true Chr09: 34075401-34080644 Phaseolus vulgaris
Phvul.009G226400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 34075401-34077400 Phaseolus vulgaris
Phvul.009G226400 2.0kb downstream 2.0kb downstream 5244 true Chr09: 34077401-34082644 Phaseolus vulgaris
Phvul.009G226400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 34080645-34082644 Phaseolus vulgaris
Phvul.009G226400 5.0kb upstream 5.0kb upstream 8244 true Chr09: 34072401-34080644 Phaseolus vulgaris
Phvul.009G226400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 34072401-34077400 Phaseolus vulgaris
Phvul.009G226400 5.0kb downstream 5.0kb downstream 8244 true Chr09: 34077401-34085644 Phaseolus vulgaris
Phvul.009G226400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 34080645-34085644 Phaseolus vulgaris
Phvul.009G226400 10.0kb upstream 10.0kb upstream 13244 true Chr09: 34067401-34080644 Phaseolus vulgaris
Phvul.009G226400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 34067401-34077400 Phaseolus vulgaris
Phvul.009G226400 10.0kb downstream 10.0kb downstream 13244 true Chr09: 34077401-34090644 Phaseolus vulgaris
Phvul.009G226400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 34080645-34090644 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303152 5265 Fabidae View MSA
124060423 5270 Rosid View MSA
123740094 5271 Pentapetalae View MSA
122788864 5272 Eudicot View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.028 0.0 83.2661    
cufflinks 26.6908 0.0 69.064    
cufflinks 23.0492 0.0 59.5779    
cufflinks 46.5519 0.0 122.859 High High
cufflinks 22.4773 0.0 58.1043    
cufflinks 15.4099 0.0 40.1031   Low
cufflinks 27.5302 0.0 71.2813    
cufflinks 49.6355 0.0 132.156 High High
cufflinks 27.9412 0.0 72.3372    
cufflinks 30.5288 0.0 79.2026    
cufflinks 27.0776 0.0 70.0591    

0 Strain