Gene : Phvul.009G206700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10906:SF9 - PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC Genomic Order:  2118
Name:  ? Phvul.009G206700 Secondary Identifier:  ? PAC:37150960
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G206700 0.5kb upstream 0.5kb upstream 4246 true Chr09: 31320160-31324405 Phaseolus vulgaris
Phvul.009G206700 0.5kb upstream 0.5kb upstream 500 false Chr09: 31323906-31324405 Phaseolus vulgaris
Phvul.009G206700 0.5kb downstream 0.5kb downstream 4246 true Chr09: 31319660-31323905 Phaseolus vulgaris
Phvul.009G206700 0.5kb downstream 0.5kb downstream 500 false Chr09: 31319660-31320159 Phaseolus vulgaris
Phvul.009G206700 1.0kb upstream 1.0kb upstream 4746 true Chr09: 31320160-31324905 Phaseolus vulgaris
Phvul.009G206700 1.0kb upstream 1.0kb upstream 1000 false Chr09: 31323906-31324905 Phaseolus vulgaris
Phvul.009G206700 1.0kb downstream 1.0kb downstream 4746 true Chr09: 31319160-31323905 Phaseolus vulgaris
Phvul.009G206700 1.0kb downstream 1.0kb downstream 1000 false Chr09: 31319160-31320159 Phaseolus vulgaris
Phvul.009G206700 2.0kb upstream 2.0kb upstream 5746 true Chr09: 31320160-31325905 Phaseolus vulgaris
Phvul.009G206700 2.0kb upstream 2.0kb upstream 2000 false Chr09: 31323906-31325905 Phaseolus vulgaris
Phvul.009G206700 2.0kb downstream 2.0kb downstream 5746 true Chr09: 31318160-31323905 Phaseolus vulgaris
Phvul.009G206700 2.0kb downstream 2.0kb downstream 2000 false Chr09: 31318160-31320159 Phaseolus vulgaris
Phvul.009G206700 5.0kb upstream 5.0kb upstream 8746 true Chr09: 31320160-31328905 Phaseolus vulgaris
Phvul.009G206700 5.0kb upstream 5.0kb upstream 5000 false Chr09: 31323906-31328905 Phaseolus vulgaris
Phvul.009G206700 5.0kb downstream 5.0kb downstream 8746 true Chr09: 31315160-31323905 Phaseolus vulgaris
Phvul.009G206700 5.0kb downstream 5.0kb downstream 5000 false Chr09: 31315160-31320159 Phaseolus vulgaris
Phvul.009G206700 10.0kb upstream 10.0kb upstream 13746 true Chr09: 31320160-31333905 Phaseolus vulgaris
Phvul.009G206700 10.0kb upstream 10.0kb upstream 10000 false Chr09: 31323906-31333905 Phaseolus vulgaris
Phvul.009G206700 10.0kb downstream 10.0kb downstream 13746 true Chr09: 31310160-31323905 Phaseolus vulgaris
Phvul.009G206700 10.0kb downstream 10.0kb downstream 10000 false Chr09: 31310160-31320159 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307016 5265 Fabidae View MSA
124063230 5270 Rosid View MSA
123738518 5271 Pentapetalae View MSA
122788956 5272 Eudicot View MSA
122046659 5273 Angiosperm View MSA
121346087 5274 Embryophyte View MSA
123425781 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.8466 0.0 63.6088    
cufflinks 13.3015 0.0 44.6765    
cufflinks 67.7137 0.0 236.895 High High
cufflinks 10.2891 0.0 36.4313    
cufflinks 8.55954 0.0 27.3343    
cufflinks 34.0431 0.0 108.744 High High
cufflinks 2.70775 0.0 11.6377   Low
cufflinks 4.01036 0.0 14.7531    
cufflinks 2.98686 0.0 12.608   Low
cufflinks 15.2273 0.0 50.1877    
cufflinks 5.72072 0.0 19.8806    

0 Strain