Gene : Phvul.009G210800 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31414:SF1 - TRANSMEMBRANE PROTEIN DDB_G0292058 Genomic Order:  2159
Name:  ? Phvul.009G210800 Secondary Identifier:  ? PAC:37149502
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G210800 0.5kb upstream 0.5kb upstream 6023 true Chr09: 31857950-31863972 Phaseolus vulgaris
Phvul.009G210800 0.5kb upstream 0.5kb upstream 500 false Chr09: 31857950-31858449 Phaseolus vulgaris
Phvul.009G210800 0.5kb downstream 0.5kb downstream 6023 true Chr09: 31858450-31864472 Phaseolus vulgaris
Phvul.009G210800 0.5kb downstream 0.5kb downstream 500 false Chr09: 31863973-31864472 Phaseolus vulgaris
Phvul.009G210800 1.0kb upstream 1.0kb upstream 6523 true Chr09: 31857450-31863972 Phaseolus vulgaris
Phvul.009G210800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 31857450-31858449 Phaseolus vulgaris
Phvul.009G210800 1.0kb downstream 1.0kb downstream 6523 true Chr09: 31858450-31864972 Phaseolus vulgaris
Phvul.009G210800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 31863973-31864972 Phaseolus vulgaris
Phvul.009G210800 2.0kb upstream 2.0kb upstream 7523 true Chr09: 31856450-31863972 Phaseolus vulgaris
Phvul.009G210800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 31856450-31858449 Phaseolus vulgaris
Phvul.009G210800 2.0kb downstream 2.0kb downstream 7523 true Chr09: 31858450-31865972 Phaseolus vulgaris
Phvul.009G210800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 31863973-31865972 Phaseolus vulgaris
Phvul.009G210800 5.0kb upstream 5.0kb upstream 10523 true Chr09: 31853450-31863972 Phaseolus vulgaris
Phvul.009G210800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 31853450-31858449 Phaseolus vulgaris
Phvul.009G210800 5.0kb downstream 5.0kb downstream 10523 true Chr09: 31858450-31868972 Phaseolus vulgaris
Phvul.009G210800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 31863973-31868972 Phaseolus vulgaris
Phvul.009G210800 10.0kb upstream 10.0kb upstream 15523 true Chr09: 31848450-31863972 Phaseolus vulgaris
Phvul.009G210800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 31848450-31858449 Phaseolus vulgaris
Phvul.009G210800 10.0kb downstream 10.0kb downstream 15523 true Chr09: 31858450-31873972 Phaseolus vulgaris
Phvul.009G210800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 31863973-31873972 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304534 5265 Fabidae View MSA
124069186 5270 Rosid View MSA
123747530 5271 Pentapetalae View MSA
122793265 5272 Eudicot View MSA
122043467 5273 Angiosperm View MSA
123429125 5275 Viridiplantae View MSA
121350323 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.3342 0.0 44.9776    
cufflinks 40.4247 0.0 105.898 High High
cufflinks 25.9815 0.0 67.1979    
cufflinks 24.5843 0.0 63.5466    
cufflinks 31.7082 0.0 82.265    
cufflinks 23.6129 0.0 61.035    
cufflinks 17.423 0.0 45.2189    
cufflinks 12.1177 0.0 31.9494   Low
cufflinks 20.4282 0.0 52.8631    
cufflinks 52.2177 0.0 138.947 High High
cufflinks 34.29 0.0 89.1161 High  

0 Strain