Gene : Phvul.009G200600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31072:SF6 - TRANSCRIPTION FACTOR TCP18 Genomic Order:  2058
Name:  ? Phvul.009G200600 Secondary Identifier:  ? PAC:37149690
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G200600 0.5kb upstream 0.5kb upstream 2486 true Chr09: 30474911-30477396 Phaseolus vulgaris
Phvul.009G200600 0.5kb upstream 0.5kb upstream 500 false Chr09: 30474911-30475410 Phaseolus vulgaris
Phvul.009G200600 0.5kb downstream 0.5kb downstream 2486 true Chr09: 30475411-30477896 Phaseolus vulgaris
Phvul.009G200600 0.5kb downstream 0.5kb downstream 500 false Chr09: 30477397-30477896 Phaseolus vulgaris
Phvul.009G200600 1.0kb upstream 1.0kb upstream 2986 true Chr09: 30474411-30477396 Phaseolus vulgaris
Phvul.009G200600 1.0kb upstream 1.0kb upstream 1000 false Chr09: 30474411-30475410 Phaseolus vulgaris
Phvul.009G200600 1.0kb downstream 1.0kb downstream 2986 true Chr09: 30475411-30478396 Phaseolus vulgaris
Phvul.009G200600 1.0kb downstream 1.0kb downstream 1000 false Chr09: 30477397-30478396 Phaseolus vulgaris
Phvul.009G200600 2.0kb upstream 2.0kb upstream 3986 true Chr09: 30473411-30477396 Phaseolus vulgaris
Phvul.009G200600 2.0kb upstream 2.0kb upstream 2000 false Chr09: 30473411-30475410 Phaseolus vulgaris
Phvul.009G200600 2.0kb downstream 2.0kb downstream 3986 true Chr09: 30475411-30479396 Phaseolus vulgaris
Phvul.009G200600 2.0kb downstream 2.0kb downstream 2000 false Chr09: 30477397-30479396 Phaseolus vulgaris
Phvul.009G200600 5.0kb upstream 5.0kb upstream 6986 true Chr09: 30470411-30477396 Phaseolus vulgaris
Phvul.009G200600 5.0kb upstream 5.0kb upstream 5000 false Chr09: 30470411-30475410 Phaseolus vulgaris
Phvul.009G200600 5.0kb downstream 5.0kb downstream 6986 true Chr09: 30475411-30482396 Phaseolus vulgaris
Phvul.009G200600 5.0kb downstream 5.0kb downstream 5000 false Chr09: 30477397-30482396 Phaseolus vulgaris
Phvul.009G200600 10.0kb upstream 10.0kb upstream 11986 true Chr09: 30465411-30477396 Phaseolus vulgaris
Phvul.009G200600 10.0kb upstream 10.0kb upstream 10000 false Chr09: 30465411-30475410 Phaseolus vulgaris
Phvul.009G200600 10.0kb downstream 10.0kb downstream 11986 true Chr09: 30475411-30487396 Phaseolus vulgaris
Phvul.009G200600 10.0kb downstream 10.0kb downstream 10000 false Chr09: 30477397-30487396 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026950 5273 Angiosperm View MSA
122312049 5265 Fabidae View MSA
124072215 5270 Rosid View MSA
123748017 5271 Pentapetalae View MSA
122796323 5272 Eudicot View MSA
121296684 5274 Embryophyte View MSA
123334806 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.211069 0.0 0.840355 Low Low
cufflinks 0.58053 0.0 2.12755    
cufflinks 0.242349 0.0 0.950426 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.556086 0.0 2.05982 Low  
cufflinks 1.20363 0.0 4.09212    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.727325 0.0 2.62124    
cufflinks 2.03401 0.0 6.54978   High

0 Strain