Gene : Phvul.009G187300 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11062//PTHR11062:SF99 - EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED // SUBFAMILY NOT NAMED Genomic Order:  1914
Name:  ? Phvul.009G187300 Secondary Identifier:  ? PAC:37149736
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5980 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G187300 0.5kb upstream 0.5kb upstream 4179 true Chr09: 28330108-28334286 Phaseolus vulgaris
Phvul.009G187300 0.5kb upstream 0.5kb upstream 500 false Chr09: 28333787-28334286 Phaseolus vulgaris
Phvul.009G187300 0.5kb downstream 0.5kb downstream 4179 true Chr09: 28329608-28333786 Phaseolus vulgaris
Phvul.009G187300 0.5kb downstream 0.5kb downstream 500 false Chr09: 28329608-28330107 Phaseolus vulgaris
Phvul.009G187300 1.0kb upstream 1.0kb upstream 4679 true Chr09: 28330108-28334786 Phaseolus vulgaris
Phvul.009G187300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 28333787-28334786 Phaseolus vulgaris
Phvul.009G187300 1.0kb downstream 1.0kb downstream 4679 true Chr09: 28329108-28333786 Phaseolus vulgaris
Phvul.009G187300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 28329108-28330107 Phaseolus vulgaris
Phvul.009G187300 2.0kb upstream 2.0kb upstream 5679 true Chr09: 28330108-28335786 Phaseolus vulgaris
Phvul.009G187300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 28333787-28335786 Phaseolus vulgaris
Phvul.009G187300 2.0kb downstream 2.0kb downstream 5679 true Chr09: 28328108-28333786 Phaseolus vulgaris
Phvul.009G187300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 28328108-28330107 Phaseolus vulgaris
Phvul.009G187300 5.0kb upstream 5.0kb upstream 8679 true Chr09: 28330108-28338786 Phaseolus vulgaris
Phvul.009G187300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 28333787-28338786 Phaseolus vulgaris
Phvul.009G187300 5.0kb downstream 5.0kb downstream 8679 true Chr09: 28325108-28333786 Phaseolus vulgaris
Phvul.009G187300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 28325108-28330107 Phaseolus vulgaris
Phvul.009G187300 10.0kb upstream 10.0kb upstream 13679 true Chr09: 28330108-28343786 Phaseolus vulgaris
Phvul.009G187300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 28333787-28343786 Phaseolus vulgaris
Phvul.009G187300 10.0kb downstream 10.0kb downstream 13679 true Chr09: 28320108-28333786 Phaseolus vulgaris
Phvul.009G187300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 28320108-28330107 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310463 5265 Fabidae View MSA
124068491 5270 Rosid View MSA
123736949 5271 Pentapetalae View MSA
122787546 5272 Eudicot View MSA
122050562 5273 Angiosperm View MSA
121350610 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.31049 0.0 10.8286   Low
cufflinks 7.18658 0.0 28.5395    
cufflinks 5.23576 0.0 22.6391    
cufflinks 7.58555 0.0 24.0823    
cufflinks 6.37983 0.0 26.3093    
cufflinks 7.13429 0.0 28.796    
cufflinks 4.27304 0.0 17.1537    
cufflinks 5.30108 0.0 22.45    
cufflinks 4.83487 0.0 19.2133    
cufflinks 5.23283 0.0 23.0943    
cufflinks 7.14613 0.0 28.914    

0 Strain