Gene : Phvul.009G190599 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1953
Name:  ? Phvul.009G190599 Secondary Identifier:  ? PAC:37150452
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G190599 0.5kb upstream 0.5kb upstream 3857 true Chr09: 28958982-28962838 Phaseolus vulgaris
Phvul.009G190599 0.5kb upstream 0.5kb upstream 500 false Chr09: 28958982-28959481 Phaseolus vulgaris
Phvul.009G190599 0.5kb downstream 0.5kb downstream 3857 true Chr09: 28959482-28963338 Phaseolus vulgaris
Phvul.009G190599 0.5kb downstream 0.5kb downstream 500 false Chr09: 28962839-28963338 Phaseolus vulgaris
Phvul.009G190599 1.0kb upstream 1.0kb upstream 4357 true Chr09: 28958482-28962838 Phaseolus vulgaris
Phvul.009G190599 1.0kb upstream 1.0kb upstream 1000 false Chr09: 28958482-28959481 Phaseolus vulgaris
Phvul.009G190599 1.0kb downstream 1.0kb downstream 4357 true Chr09: 28959482-28963838 Phaseolus vulgaris
Phvul.009G190599 1.0kb downstream 1.0kb downstream 1000 false Chr09: 28962839-28963838 Phaseolus vulgaris
Phvul.009G190599 2.0kb upstream 2.0kb upstream 5357 true Chr09: 28957482-28962838 Phaseolus vulgaris
Phvul.009G190599 2.0kb upstream 2.0kb upstream 2000 false Chr09: 28957482-28959481 Phaseolus vulgaris
Phvul.009G190599 2.0kb downstream 2.0kb downstream 5357 true Chr09: 28959482-28964838 Phaseolus vulgaris
Phvul.009G190599 2.0kb downstream 2.0kb downstream 2000 false Chr09: 28962839-28964838 Phaseolus vulgaris
Phvul.009G190599 5.0kb upstream 5.0kb upstream 8357 true Chr09: 28954482-28962838 Phaseolus vulgaris
Phvul.009G190599 5.0kb upstream 5.0kb upstream 5000 false Chr09: 28954482-28959481 Phaseolus vulgaris
Phvul.009G190599 5.0kb downstream 5.0kb downstream 8357 true Chr09: 28959482-28967838 Phaseolus vulgaris
Phvul.009G190599 5.0kb downstream 5.0kb downstream 5000 false Chr09: 28962839-28967838 Phaseolus vulgaris
Phvul.009G190599 10.0kb upstream 10.0kb upstream 13357 true Chr09: 28949482-28962838 Phaseolus vulgaris
Phvul.009G190599 10.0kb upstream 10.0kb upstream 10000 false Chr09: 28949482-28959481 Phaseolus vulgaris
Phvul.009G190599 10.0kb downstream 10.0kb downstream 13357 true Chr09: 28959482-28972838 Phaseolus vulgaris
Phvul.009G190599 10.0kb downstream 10.0kb downstream 10000 false Chr09: 28962839-28972838 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303386 5265 Fabidae View MSA
124066157 5270 Rosid View MSA
123739123 5271 Pentapetalae View MSA
122794218 5272 Eudicot View MSA
122042407 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.14331 0.0 15.9283   Low
cufflinks 8.75288 0.0 28.7699   High
cufflinks 5.79207 0.0 20.1846   Low
cufflinks 5.70051 0.0 17.5238   Low
cufflinks 6.69818 0.0 19.8874    
cufflinks 9.26725 0.0 30.2293   High
cufflinks 6.97272 0.0 23.696    
cufflinks 7.13401 0.0 23.8361    
cufflinks 7.33484 0.0 24.8894    
cufflinks 7.59935 0.0 25.5418    
cufflinks 6.82594 0.0 20.3066    

0 Strain